Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq11536 711 0.0 >seq11536 Length=2982 Score = 711 bits (788), Expect = 0.0 Identities = 698/897 (78%), Gaps = 4/897 (0%) Strand=Plus/Plus Query 46040 TACCATATCCGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACG 46099 || ||| | || || || || | ||||||||||| |||||| ||||| | | || Sbjct 1969 TATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCAA 2028 Query 46100 TACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGC 46159 |||||||| ||||||||||| | | ||||||||||||||||||||| ||||||||| Sbjct 2029 TACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGT 2088 Query 46160 CTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGAT 46219 |||||||| |||||||| || ||||||||||||||||| ||||| || || ||||||||| Sbjct 2089 CTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGAT 2148 Query 46220 GTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGT 46279 ||||| || ||||||||||||| ||| | ||||||||||||||| || || || || Sbjct 2149 GTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGC 2208 Query 46280 TTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGCG 46339 || || ||||| |||||||| || |||| ||||||||||||| | ||||||||||||| Sbjct 2209 TTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGCG 2268 Query 46340 TGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGCCAG 46399 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2269 TGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAG 2328 Query 46400 ACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGTGGTGTGGCCGTACACCAACAGTGAT 46459 |||||||||||||| |||||| | ||||||||| | |||| | || | | |||| || Sbjct 2329 ACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTAAT 2388 Query 46460 GTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTACAGCTTCAGCGCCCTGAAGGACCGC 46519 |||||| || ||| | |||| | ||| |||||||||||||||||||||||||||||| Sbjct 2389 GTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCGC 2448 Query 46520 CACACGGCGGTGGAGGTGAATTACACCGACCCGCAGAACGGCTGGCAGACCTCCACGGAA 46579 || | || || |||||||| | | |||||| | ||||||||| |||| | || || Sbjct 2449 CATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAGAG 2508 Query 46580 CTGGTGGAAGACCCGGAAGCCATACTGCGCTACGGGCGCAACCTGCTGAAGATGGATGCG 46639 || || ||||| || | ||||| || ||||| || || | |||||||||||| Sbjct 2509 CTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGCC 2568 Query 46640 TTCGGTTGCACCAGTCGCGGTCAGGCCCACCGTGCCGGGCTGTGGGTGATAAAGACCGGA 46699 || || || ||||| || || ||||| ||||| |||||||||||| |||| || || | | Sbjct 2569 TTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGAA 2628 Query 46700 CTGCTGGAAACGCAGACGGTGGATTTCACGCTCGGGTCACAGGGGCTGCGTCACACACCC 46759 ||||||||||||||||| |||||||||| |||| || | ||||| || || ||| Sbjct 2629 CTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTTCGCCATGTACCG 2688 Query 46760 GGTGACATTATTGAAATCTGTGATAACGACTATGCCGGGACCATGACCGGCGGACGTGTC 46819 || || ||||||||||||| ||| | ||||||||||| | || ||||| || ||||| Sbjct 2689 GGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGTG 2748 Query 46820 CTGTCCATCGATGCCGCCAG--CCGCACCCTGACACTGGACCGTGAGGTGACCCTGCCGG 46877 ||| | | || | ||||| ||| || ||||| || |||||||| | || ||||| Sbjct 2749 CTGGCGGT-GA-ACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATCACGCTGCCAT 2806 Query 46878 AGACCGGTGCCGCCACGGTGAACCTGATTAACGGCAGCGGTAAGCCGGTGAGCGTGG 46934 ||||| |||| | | | |||| || |||| || || || ||||| ||||||| Sbjct 2807 CCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTCAGCGTGG 2863 Score = 489 bits (542), Expect = 5e-134 Identities = 493/636 (78%), Gaps = 6/636 (1%) Strand=Plus/Plus Query 46040 TACCATATC-CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCAC 46098 || ||| || || || || || | ||||||||||| |||||| ||||| | | || Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60 Query 46099 GTACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTG 46158 |||||||| ||||||||||| | | ||||||||||||||||||||| ||||||||| Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120 Query 46159 CCTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGA 46218 |||||||| |||||||| || ||||||||||||||||| ||||| || || |||||||| Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180 Query 46219 TGTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 46278 |||||| || ||||||||||||| ||| | ||||||||||||||| || || || || Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240 Query 46279 TTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGC 46338 || || ||||| |||||||| || |||| ||||||||||||| | |||||||||||| Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300 Query 46339 GTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGCC 46397 |||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| | Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360 Query 46398 AGACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGTGGTGTGGCCGTACACCAACAGTG 46457 |||||||||||||||| || ||| | ||||||||| | |||| | || | | | | Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420 Query 46458 ATGTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTACAGCTTCAGCGCCCTGAAGGACC 46517 ||||| || || ||| | |||| | || |||||||||||| ||||||||| |||| Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480 Query 46518 GCCACACGGCGGTGGAGGTGAATTACACCGACCCGCAGAACGGCTGGCAGACCTCCACGG 46577 |||| | || || |||||||| | | ||||| | ||||||||| |||| | || | Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540 Query 46578 AACTGGTGGAAGACCCGGAAGCCATACTGC--GCTACGGGCGCAACCTGCTGAAGATGGA 46635 | || || ||| | || | ||||| ||| | ||| | || || | |||||||| Sbjct 541 AGCTTGTTGAATATACGCATGCCAT--TGCCTGTTACAGTCGTAATGTTACTAAGATGGA 598 Query 46636 TGCGTTCGGTTGCACCAGTCGCGGTCAGGCCCACCG 46671 ||| || || || ||||| || || ||||| ||||| Sbjct 599 TGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175509244506240