Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_032146.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value seq17440 179 3e-42 >seq17440 Length=24565398 Score = 179 bits (198), Expect = 3e-42 Identities = 456/680 (67%), Gaps = 28/680 (4%) Strand=Plus/Plus Query 266 ATGATTCACCTAAATGATGTCTTTCAGGAGGATCTTCCAATCTGGAGTTCATCACCTGGG 325 || ||||| | ||||| |||||| | ||||| ||||| ||| || ||||||||| Sbjct 4532280 ATCATTCATTTGAATGACGTCTTTGGCCAAGATCTACCAATTTGGTCATCTTCACCTGGG 4532339 Query 326 CTTCCATGGATGCAATGCGGATATAGAACAAAGAATGACATTCGTCGCGACCCCGACGCG 385 ||||||||| || || || | || ||| ||||||| || |||||||| || Sbjct 4532340 ATTCCATGGAGTCAGATTGGCTACAAGACGAAGGATGACATCCGCAAAGACCCCGAAGCA 4532399 Query 386 ATCAACCGCATTAGGCACTTCTGGCATAGAATTAAATGTTTCGAAGAAGTACATC----T 441 | | || | || | |||||||| | | || | ||| |||| ||||| | Sbjct 4532400 GTACAGCGAGTACGGTATTTCTGGCACCAAGTCAA--GGCTCG--GAAGGACATCAGCTT 4532455 Query 442 ACCGGACTGTTGTGCATATGTGCG--TACACATATTGTTGAGCGTGGCGAGACAAAAGTC 499 || || || ||||| || |||| | ||| | | || || ||| || ||||| || Sbjct 4532456 GCCAGATTGCTGTGCGTACATGCGATTCCACTTGT-GTAAAGT-TGGAGATACAAAGGTG 4532513 Query 500 CGTGCAGTGTGGGGTTATCCGGCAACGGTGACCTTTGGCGAAGCAGTATTTGCACTCCCC 559 |||||||| ||||| || || ||||| || || |||| ||||| | || || || || Sbjct 4532514 CGTGCAGTTTGGGGCTACCCAGCAACTGTCACTTTTGCTGAAGCCATGTTCGCTCTACCA 4532573 Query 560 CTGATTCAAGCGTATAAGAAGGGAGGATATCCTATTGCATATGGATTTGAGACCGGCAAC 619 |||||| ||| ||| ||||| || || ||| | |||||||||| || || || | Sbjct 4532574 CTGATTAGAGCTTATCAGAAGAGACGAACTCCATTAGCATATGGATACGAAACTGGAA-- 4532631 Query 620 GCTGGTTGTAAG---AAGATGTTCCATG-GTATGAAGGGCAACCACTACCTTGGAATTGA 675 |||| | | | || || ||||| || | |||| | |||| |||||| ||||| Sbjct 4532632 -CTGGAAGCATGCGGAAAATATTCCAGCAGTTTCAAGG-CTCGCACTTCCTTGGTATTGA 4532689 Query 676 TTTCACCAGTTTTGATAAGACCCTTCCACCATGGCTGGTCTCCACGGCCTTTGACATACT 735 |||| | | || || || || ||||| ||||||| | ||||||||| || | Sbjct 4532690 TTTCTCAAACTTCGACAAAACTCTTCCGGCATGGCTAATTAAATTGGCCTTTGATGTAAT 4532749 Query 736 GGCCTATAACATTGATTTTCTACACTATCGAGATCACGGAATTGCTCGTGTCAAA--TCA 793 ||| ||| | ||||| | | |||| ||||| || | | | ||| | ||| Sbjct 4532750 GGCAATTAATTTGGATTTCACAAAATATCATGATCATGGCGT--CCCCTGTACACGTTCA 4532807 Query 794 ATGGTCCATATGTTT--AACGTTATTAAGGATTACGCCATTAACACGAAAATACGCATGT 851 || | | | ||| ||| || |||||||| |||||||| ||||| | |||| Sbjct 4532808 ATAATACGCGTCTTTGAAACCTTGG--AGGATTACTGTATTAACACCAAAATCAGAATGT 4532865 Query 852 GTAATGGAGAAAGATATATAAAGAAAAGTGGTCTTGCAAGTGGAAGTTACTTTACACAGC 911 ||||||| || ||||| ||||| | || | || ||||||||||| || ||||||| Sbjct 4532866 GTAATGGTGAGAGATACTTAAAGCGATCCGGCTTAGCTAGTGGAAGTTATTTCACACAGC 4532925 Query 912 TTGTTGGCAGTGTTTGTAAC 931 ||||||| ||| | ||||| Sbjct 4532926 TTGTTGGAAGTATAAGTAAC 4532945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4616744358720