Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5121 127 4e-27 seq1740 125 1e-26 seq3699 89.7 9e-16 >seq5121 Length=1223 Score = 127 bits (140), Expect = 4e-27 Identities = 184/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 850 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 791 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 790 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 732 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 731 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 672 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 671 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 613 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 612 AAAGTTAGAGG 602 >seq1740 Length=1006 Score = 125 bits (138), Expect = 1e-26 Identities = 185/252 (73%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTG-TTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCA 129 |||||||||| ||||||||||| || ||||||||| | ||| ||||| | ||| Sbjct 847 TTACTTTGAACAAATTAGAGTGCTTAAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCA 788 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAAT 187 ||| ||||| |||| ||| | | ||||| ||| ||||||| || | | ||||| Sbjct 787 TGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAAT 729 Query 188 GATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 728 GATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGAC 669 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||||||||| |||||||| || |||| ||||||||||||||||| |||| Sbjct 668 CGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAAC 610 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 609 GAAAGTTAGAGG 598 >seq3699 Length=1221 Score = 89.7 bits (98), Expect = 9e-16 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT-CT 241 |||||||||||||| | | ||||| | |||||| | |||||||||||| || Sbjct 1214 GTAATGATTAATAGAAGCATTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTACT 1155 Query 242 TGGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||| | | |||||||||| |||||||| || |||| ||||||||||||||||| Sbjct 1154 TGGAACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA 1095 Query 301 GTGAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 1094 -AGAACGAAAGTTAGAGG 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915152949568