Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq4953 329 8e-88 seq16 329 8e-88 >seq4953 Length=802672 Score = 329 bits (364), Expect = 8e-88 Identities = 309/391 (79%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 1106 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 1047 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||||||||||| ||||||||||| | |||| | | ||||||| || |||||||| Sbjct 1046 TTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTTCGGCTTAAC 987 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACG 200 | | ||| ||||| | |||| ||| ||||| ||||| |||||| |||| | Sbjct 986 CGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGGAACTCCATG 927 Query 201 TGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGG 260 |||||| ||||||||||||||||| ||||||||||||| |||||||||| || || | Sbjct 926 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGGCTGTCTAGT 867 Query 261 ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 320 | ||||||||| | || ||||||| |||| ||||||||||||||||||||||||||| Sbjct 866 CTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATACCCTGGTAG 807 Query 321 TCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTACTTCCTT-GGTAACGTAGC 378 |||| ||| |||||||| |||| |||||| || ||| | |||| || || ||| Sbjct 806 TCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAGTGCCGCAGC 747 Query 379 TAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||| | ||| ||||||||||| ||| Sbjct 746 TAACGCATTAAGCACTCCGCCTGGGGAGTAC 716 Score = 329 bits (364), Expect = 8e-88 Identities = 309/391 (79%), Gaps = 2/391 (1%) Strand=Plus/Plus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 785666 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 785725 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||||||||||| ||||||||||| | |||| | | ||||||| || |||||||| Sbjct 785726 TTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTTCGGCTTAAC 785785 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACG 200 | | ||| ||||| | |||| ||| ||||| ||||| |||||| |||| | Sbjct 785786 CGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGGAACTCCATG 785845 Query 201 TGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGG 260 |||||| ||||||||||||||||| ||||||||||||| |||||||||| || || | Sbjct 785846 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGGCTGTCTAGT 785905 Query 261 ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 320 | ||||||||| | || ||||||| |||| ||||||||||||||||||||||||||| Sbjct 785906 CTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATACCCTGGTAG 785965 Query 321 TCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTACTTCCTT-GGTAACGTAGC 378 |||| ||| |||||||| |||| |||||| || ||| | |||| || || ||| Sbjct 785966 TCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAGTGCCGCAGC 786025 Query 379 TAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||| | ||| ||||||||||| ||| Sbjct 786026 TAACGCATTAAGCACTCCGCCTGGGGAGTAC 786056 >seq16 Length=193047 Score = 329 bits (364), Expect = 8e-88 Identities = 309/391 (79%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 1105 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 1046 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||||||||||| ||||||||||| | |||| | | ||||||| || |||||||| Sbjct 1045 TTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTTCGGCTTAAC 986 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACG 200 | | ||| ||||| | |||| ||| ||||| ||||| |||||| |||| | Sbjct 985 CGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGGAACTCCATG 926 Query 201 TGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGG 260 |||||| ||||||||||||||||| ||||||||||||| |||||||||| || || | Sbjct 925 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGGCTGTCTAGT 866 Query 261 ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 320 | ||||||||| | || ||||||| |||| ||||||||||||||||||||||||||| Sbjct 865 CTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATACCCTGGTAG 806 Query 321 TCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTACTTCCTT-GGTAACGTAGC 378 |||| ||| |||||||| |||| |||||| || ||| | |||| || || ||| Sbjct 805 TCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAGTGCCGCAGC 746 Query 379 TAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||| | ||| ||||||||||| ||| Sbjct 745 TAACGCATTAAGCACTCCGCCTGGGGAGTAC 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289533701664