Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4953 141 1e-31 >seq4953 Length=802672 Score = 141 bits (156), Expect = 1e-31 Identities = 181/248 (73%), Gaps = 21/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| || ||||| | || ||| Sbjct 219794 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACGTCATCTTACGATTTT-GCAG 219852 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||| |||||||||| | || ||| ||||| ||| Sbjct 219853 AAACCTGTGTTTTTGATAAACAGTCGTCTGGGCCTCTTCACTGCG----------GCT-- 219900 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | | | ||| |||||||||| |||||||||||||| ||||||||||| Sbjct 219901 ----GTCCGTTAGGA-CAG---CACCCCTTCTTCCGAAGTTACGGGGTCATTTTGCCGAG 219952 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| | || | ||| || || |||| | ||| |||||||||||| Sbjct 219953 TTCCTTAACGAGAGTTCTCTCGCTCACCTGAGGATACTCTCCTCGACTACCTGTGTCGGT 220012 Query 241 TTACGGTA 248 || ||||| Sbjct 220013 TTGCGGTA 220020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694365416493