Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq4953 672 0.0 seq16 666 0.0 >seq4953 Length=802672 Score = 672 bits (744), Expect = 0.0 Identities = 448/496 (90%), Gaps = 2/496 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 659 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| || |||||||||||||||||| |||||||||| |||| | Sbjct 658 GTGGTTTAATTCGATGCTACGCGAAGAACCTTACCAGGTCTTGACATCTTCTGTTAACCT 599 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| |||| ||||||||||||| |||| ||||||||| ||||||||||||||||| Sbjct 598 AAGAGATT-AGGTGTCCCCTTCGGGGG-CAGAATGACAGGTGGTGCATGGTTGTCGTCAG 541 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTGC 481 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 480 CAGCATTAAGTTGGGCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAT 421 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 420 GACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTAC 361 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 || | | |||||||||||||||||||| |||| | ||||| ||||||||||||||||| Sbjct 360 AACGAGTTGCGAAACCGCGAGGTCAAGCTAATCTCTTAAAGCCGTTCTCAGTTCGGATTG 301 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 || |||||||||| || |||||| ||||||||||||||||||| ||||||||||| || Sbjct 300 CAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCAC 241 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 240 GGTGAATACGTTCCCG 225 Score = 654 bits (724), Expect = 0.0 Identities = 445/496 (90%), Gaps = 3/496 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 786054 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGG-ACCCGCACAAGCGGTGGAGCAT 786112 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| || |||||||||||||||||| |||||||||| |||| | Sbjct 786113 GTGGTTTAATTCGATGCTACGCGAAGAACCTTACCAGGTCTTGACATCTTCTGTTAACCT 786172 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| |||| ||||||||||||| |||| ||||||||| ||||||||||||||||| Sbjct 786173 AAGAGATT-AGGTGTCCCCTTCGGGGG-CAGAATGACAGGTGGTGCATGGTTGTCGTCAG 786230 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 786231 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTGC 786290 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 786291 CAGCATTAAGTTGGTCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAT 786350 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 786351 GACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTAC 786410 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 || | | |||||||||||||| ||||| |||| | ||||| ||||||||||||||||| Sbjct 786411 AACGAGTTGCGAAACCGCGAGGCCAAGCTAATCTCTTAAAGCCGTTCTCAGTTCGGATTG 786470 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 || |||||||||| || |||||| ||||||||||||||||||| ||||||||||| || Sbjct 786471 CAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCAC 786530 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 786531 GGTGAATACGTTCCCG 786546 >seq16 Length=193047 Score = 666 bits (738), Expect = 0.0 Identities = 447/496 (90%), Gaps = 2/496 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 658 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| || |||||||||||||||||| |||||||||| |||| | Sbjct 657 GTGGTTTAATTCGATGCTACGCGAAGAACCTTACCAGGTCTTGACATCTTCTGTTAACCT 598 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| |||| ||||||||||||| |||| ||||||||| ||||||||||||||||| Sbjct 597 AAGAGATT-AGGTGTCCCCTTCGGGGG-CAGAATGACAGGTGGTGCATGGTTGTCGTCAG 540 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 539 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTGC 480 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 479 CAGCATTAAGTTGGGCACTCTAGTGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAT 420 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 419 GATGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTAC 360 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 || | | |||||||||||||||||||| |||| | ||||| ||||||||||||||||| Sbjct 359 AACGAGTTGCGAAACCGCGAGGTCAAGCTAATCTCTTAAAGCCGTTCTCAGTTCGGATTG 300 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 ||| |||||||||| || |||||| ||||||||||||||||||| ||||||||||| || Sbjct 299 TAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCAC 240 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 239 GGTGAATACGTTCCCG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503922679360