Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1691 262 7e-68 seq1669 255 1e-65 seq3259 196 8e-48 seq3769 123 4e-26 seq4953 82.4 1e-13 >seq1691 Length=1186 Score = 262 bits (290), Expect = 7e-68 Identities = 195/224 (87%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 635 AACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGCA-TGGGTGAACAATCCA 693 Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 694 ACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 753 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 754 GACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGAC 813 Query 230 ACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 |||||| | | ||| || | | |||||||||||||||| Sbjct 814 ACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 856 >seq1669 Length=1035 Score = 255 bits (282), Expect = 1e-65 Identities = 191/220 (87%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 54 TGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113 ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1035 TGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGCA-TGGGTGAACAATCCAACGC 977 Query 114 TTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG 173 || ||||| |||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 976 TTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACG 917 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct 916 TCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCT 857 Query 234 CTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 || | | ||| || | | |||||||||||||||| Sbjct 856 CTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 818 >seq3259 Length=1158 Score = 196 bits (216), Expect = 8e-48 Identities = 128/141 (91%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| Sbjct 445 TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATC 504 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | Sbjct 505 GAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCAAT 564 Query 215 GGTAACTTTTCTGGCACCTCT 235 ||||||||||||| ||| ||| Sbjct 565 GGTAACTTTTCTGACACATCT 585 >seq3769 Length=1000 Score = 123 bits (136), Expect = 4e-26 Identities = 97/114 (85%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1000 ATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAA 941 Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 |||||||| ||||||| | | ||| || | | |||||||||||||||| Sbjct 940 CTTTTCTGACACCTCTTG--TTAAAACTCTTTAAACCAAAAGGATCGATAGGCC 889 >seq4953 Length=802672 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 219046 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 219105 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 219106 CTTGGGACCAACTACAGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 219162 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | ||||| |||||||| |||| ||||| Sbjct 219163 CCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTTT 219217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854356075296