Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4953 306 1e-80 >seq4953 Length=802672 Score = 306 bits (338), Expect = 1e-80 Identities = 382/516 (74%), Gaps = 21/516 (4%) Strand=Plus/Plus Query 89 GGCCCCCTAGACCATCCAGT-GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAA 147 || ||||| | ||| |||| ||||||||||| || | | ||| ||| ||||| Sbjct 220736 GGACCCCTTGTCCAAACAGTTGCTCTACCTCCATGATTCTAAATCCGAGGCTAACCCTAA 220795 Query 148 ATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACA 207 | ||||||| |||||||||||||| | ||||| | |||| ||||||| ||||||||| Sbjct 220796 AGCTATTTCGGAGAGAACCAGCTATCTCCAAGTTCGTTTGGAATTTCACCGCTATCCACA 220855 Query 208 GGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGC 267 ||||||| || |||||||| || |||||||| ||||| || ||||| || | Sbjct 220856 CCTCATCCCAGCACTTTTCAACGTACACGGGTTCGGACCTCCGGTGCGTATTACC-GCAC 220914 Query 268 TT-CAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT--AC 324 || || |||| |||||||||||||| | | ||||||||| || | || | | || Sbjct 220915 TTTCATCCTGGACATGGATAGATCACCTGGTTTCGGGTCT--ATGGCAACATACTTCAAC 220972 Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACA-CGGGTTAACCTCGCGACACAA 383 ||||||||| |||||||||||||| ||||| | | | | ||||||| || | ||| Sbjct 220973 GCCCTATTCAGACTCGCTTTCGCTTCGGCTCCGCTTTTTCAGCTTAACCTTGC-ATGCAA 221031 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 | ||||||| || ||||||| ||| |||||||| ||||| | |||| || Sbjct 221032 CTATAACTCGCCGGTTCATTCTACAAGAGGCACGCTATCACC-----CTTAAATGG---- 221082 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503 |||| || | |||||||||||||||| |||| ||||||||||||||| | ||||| Sbjct 221083 ---GCTCTAACTGCTTGTAGGCACATGGTTGCAGGAACTATTTCACTCCCCTTCCGGGGT 221139 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||||||||||||||||||||| || | ||||||||||| | | ||||||||| || Sbjct 221140 GCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGGTAGTATTTAGCCT 221199 Query 564 TAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | | |||||| || | ||| |||| ||||| Sbjct 221200 TGGGAGATGGTCCTCCCGGCTTCCGACGACGTTTCA 221235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817506557184