Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4953 277 3e-72 seq16 277 3e-72 >seq4953 Length=802672 Score = 277 bits (306), Expect = 3e-72 Identities = 228/278 (82%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||||||||||||||| | | || | ||||||||||||||||||| Sbjct 835 CCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACTAGACAGCCGCCTTCGCCACTGGTGT 894 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||||| ||| |||| | ||||| | |||| Sbjct 895 TCCTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTGTCCTCTTCTGCAC 954 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||||||| ||||| |||| |||| | | ||||||||| |||| Sbjct 955 TCAAGTTTCCCAGTTTCCGATGCACTTCTCCGGTTAAGCCGAAGGCTTTCACATCAGACT 1014 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||| | | | |||||| ||||||||||||||| ||||||||||||||||| Sbjct 1015 TAGAAGACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG 1074 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||||||||||||||| ||| Sbjct 1075 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGACTT 1112 Score = 277 bits (306), Expect = 3e-72 Identities = 228/278 (82%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||||||||||||||| | | || | ||||||||||||||||||| Sbjct 785937 CCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACTAGACAGCCGCCTTCGCCACTGGTGT 785878 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||||| ||| |||| | ||||| | |||| Sbjct 785877 TCCTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTGTCCTCTTCTGCAC 785818 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||||||| ||||| |||| |||| | | ||||||||| |||| Sbjct 785817 TCAAGTTTCCCAGTTTCCGATGCACTTCTCCGGTTAAGCCGAAGGCTTTCACATCAGACT 785758 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||| | | | |||||| ||||||||||||||| ||||||||||||||||| Sbjct 785757 TAGAAGACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG 785698 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||||||||||||||| ||| Sbjct 785697 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGACTT 785660 >seq16 Length=193047 Score = 277 bits (306), Expect = 3e-72 Identities = 228/278 (82%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||||||||||||||| | | || | ||||||||||||||||||| Sbjct 834 CCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACTAGACAGCCGCCTTCGCCACTGGTGT 893 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||||| ||| |||| | ||||| | |||| Sbjct 894 TCCTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTGTCCTCTTCTGCAC 953 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||||||| ||||| |||| |||| | | ||||||||| |||| Sbjct 954 TCAAGTTTCCCAGTTTCCGATGCACTTCTCCGGTTAAGCCGAAGGCTTTCACATCAGACT 1013 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||| | | | |||||| ||||||||||||||| ||||||||||||||||| Sbjct 1014 TAGAAGACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG 1073 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||||||||||||||| ||| Sbjct 1074 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGACTT 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828758722911