Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4953 343 2e-92 seq16 185 1e-44 >seq4953 Length=802672 Score = 343 bits (380), Expect = 2e-92 Identities = 241/275 (88%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| | | ||| ||||||||| |||||| ||||| | |||| || ||||| |||| Sbjct 218874 CGAGGCGAGTTTCACACTTAGATGCTTTCAGCGTTTATCTCGTCCATACATAGCTACCCA 218933 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||| ||| | |||| | |||||||| |||||| ||| |||||||||||||||||||||| Sbjct 218934 GCTGTGCGCCTGGCGGCGCAACTGGTACACCAGCGGTATGTCCATCCCGGTCCTCTCGTA 218993 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 218994 CTAGGGATAGCTCCTCTCAAATTTCCTGCGCCCGCGACGGATAGGGACCGAACTGTCTCA 219053 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 219054 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 219113 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||| ||||||||||||| || |||||||||||| Sbjct 219114 CAACTACAGCCCCAGGATGCGATGAGCCGACATCG 219148 >seq16 Length=193047 Score = 185 bits (204), Expect = 1e-44 Identities = 143/170 (84%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| | | ||| ||||||||| |||||| ||||| | |||| || ||||| |||| Sbjct 192878 CGAGGCGAGTTTCACACTTAGATGCTTTCAGCGTTTATCTCGTCCATACATAGCTACCCA 192937 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||| ||| | |||| | |||||||| |||||| ||| |||||||||||||||||||||| Sbjct 192938 GCTGTGCGCCTGGCGGCGCAACTGGTACACCAGCGGTATGTCCATCCCGGTCCTCTCGTA 192997 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCG 170 ||| ||| ||||||||||||||||||| ||||| |||||||||||||||| Sbjct 192998 CTAGGGATAGCTCCTCTCAAATTTCCTGCGCCCGCGACGGATAGGGACCG 193047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780761113476