Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4953 214 4e-53 seq16 205 2e-50 >seq4953 Length=802672 Score = 214 bits (236), Expect = 4e-53 Identities = 318/449 (71%), Gaps = 44/449 (10%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | ||||| ||||||||| |||||||||| ||| |||||| ||| || ||||| Sbjct 785594 TTTACGAGCCGAAACCCTTCTTCACTCACGCGGCATTGCTCCATCAGACTTTCGTCCATT 785535 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 785534 GTGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 785475 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | | | |||||||| | |||| | ||| | |||| |||| ||| ||| | | ||| Sbjct 785474 GGCCGATTACCCTCTCAGGTCGGCTACGCATCATTGCCTTGGTGAGCCTTTATCTCACCA 785415 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTT--- 241 |||||||||| | || | ||||| | || || | || | |||| || |||| Sbjct 785414 ACTAGCTAATGCGCCGCGGATCCATCCAAAAGCGATA-GCACAAAGG---CCATCTTTCA 785359 Query 242 -------------TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288 |||| || || ||||| |||||||||| | |||||||| ||||| Sbjct 785358 AACGAAAACCATGTGGT-TTTCGTTGTTATACGGTATTAGCATCTGTTTCCAGGTGTTAT 785300 Query 289 CCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCG--------- 338 |||| || |||| ||| ||| ||||||||| || ||||||||| Sbjct 785299 CCCCTTCTTCTGGGCAGGTTATCCACGTGTTACTCACCAGTTCGCCACTCGCTGCTAACT 785240 Query 339 TCAGCGAAGC---AGCAAGCTGC----TTCCT-----GTTAC-CGTTCGACTTGCATGTG 385 | || |||| |||||| | || | | || |||||||||||||||| Sbjct 785239 TAAGTCAAGCTAATGCAAGCATCAACTATCATTAGGCGCAACTCGTTCGACTTGCATGTA 785180 Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||| |||||||||||||| ||||| Sbjct 785179 TTAGGCATGCCGCCAGCGTTCGTCCTGAG 785151 Score = 208 bits (230), Expect = 2e-51 Identities = 318/450 (71%), Gaps = 46/450 (10%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | ||||| ||||||||| |||||||||| ||| |||||| ||| || ||||| Sbjct 1178 TTTACGAGCCGAAACCCTTCTTCACTCACGCGGCATTGCTCCATCAGACTTTCGTCCATT 1237 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 1238 GTGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 1297 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | | | |||||||| | |||| | ||| | |||| |||| ||| ||| | | ||| Sbjct 1298 GGCCGATTACCCTCTCAGGTCGGCTACGCATCATTGCCTTGGTGAGCCTTTATCTCACCA 1357 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTT--- 241 |||||||||| | || | ||||| | || || | || | |||| || |||| Sbjct 1358 ACTAGCTAATGCGCCGCGGATCCATCCAAAAGCGATA-GCACAAAGG---CCATCTTTCA 1413 Query 242 -------------TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288 |||| || || ||||| |||||||||| | |||||||| ||||| Sbjct 1414 AACGAAAACCATGTGGT-TTTCGTTGTTATACGGTATTAGCATCTGTTTCCAGGTGTTAT 1472 Query 289 CCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA- 346 |||| || |||| ||| ||| ||||||||| || ||||||||| | || || Sbjct 1473 CCCCTTCTTCTGGGCAGGTTATCCACGTGTTACTCACCAGTTCGCCACTCG-CTGCTAAC 1531 Query 347 -GCAG-CAAGCT-------GCTTC--CTGTTA-----------CCGTTCGACTTGCATGT 384 || |||| | || || || | | |||||||||||||||| Sbjct 1532 TTAAGTCAAGTTAATGCAAGCATCAACTATCATTAGGCGCAGCTCGTTCGACTTGCATGT 1591 Query 385 GTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||| |||||||||||||| ||||| Sbjct 1592 ATTAGGCATGCCGCCAGCGTTCGTCCTGAG 1621 >seq16 Length=193047 Score = 205 bits (226), Expect = 2e-50 Identities = 317/450 (70%), Gaps = 46/450 (10%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | ||||| ||||||||| |||||||||| ||| |||||| ||| || ||||| Sbjct 1177 TTTACGAGCCGAAACCCTTCTTCACTCACGCGGCATTGCTCCATCAGACTTTCGTCCATT 1236 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 1237 GTGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 1296 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | | | |||||||| | |||| | ||| | |||| |||| ||| ||| | | ||| Sbjct 1297 GGCCGATTACCCTCTCAGGTCGGCTACGCATCATTGCCTTGGTGAGCCTTTATCTCACCA 1356 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTT--- 241 |||||||||| | || | ||||| | || || | || | |||| || |||| Sbjct 1357 ACTAGCTAATGCGCCGCGGATCCATCCAAAAGCGATA-GCACAAAGG---CCATCTTTCA 1412 Query 242 -------------TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288 |||| || | ||||| |||||||||| | |||||||| ||||| Sbjct 1413 AATGAAAACCATGTGGT-TTTCATTGTTATACGGTATTAGCATCTGTTTCCAGGTGTTAT 1471 Query 289 CCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA- 346 |||| || |||| ||| ||| ||||||||| || ||||||||| | || || Sbjct 1472 CCCCTTCTTCTGGGCAGGTTATCCACGTGTTACTCACCAGTTCGCCACTCG-CTGCTAAC 1530 Query 347 -GCAG-CAAGCT-------GCTTC--CTGTTA-----------CCGTTCGACTTGCATGT 384 || |||| | || || || | | |||||||||||||||| Sbjct 1531 TTAAGTCAAGTTAATGCAAGCATCAACTATCATTAGGCGCAGCTCGTTCGACTTGCATGT 1590 Query 385 GTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||| |||||||||||||| ||||| Sbjct 1591 ATTAGGCATGCCGCCAGCGTTCGTCCTGAG 1620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222337156416