Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4953 325 1e-86 seq16 316 6e-84 >seq4953 Length=802672 Score = 325 bits (360), Expect = 1e-86 Identities = 378/514 (74%), Gaps = 37/514 (7%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| |||| || |||||||||| ||||| |||||||||| | | | |||||||| Sbjct 1522 GAGTGGCGAACTGGTGAGTAACACGTGGATAACCTGCCCAGAAGAAGGGGATAACACCTG 1463 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT-- 139 |||| |||||||||| |||| | || | | |||||| || | |||| | Sbjct 1462 GAAACAGATGCTAATACCGTATAACA-ACGAAAACCACATGGTTTTCGTTTGAAAGATGG 1404 Query 140 --------CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGG 191 | || | |||| || ||||| | |||||||||||||| || ||| || Sbjct 1403 CCTTTGTGCTATCGCTTTTGGATGGATCCGCGGCGCATTAGCTAGTTGGTGAGATAAAGG 1344 Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 || |||||||| | ||| ||||||||||||||||||| |||||||||||||| |||||| Sbjct 1343 CTCACCAAGGCAATGATGCGTAGCCGACCTGAGAGGGTAATCGGCCACATTGGGACTGAG 1284 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||| ||||||||||||||||||||| |||||| || |||||||| | |||| | Sbjct 1283 ACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGAAAGTC 1224 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 ||||| ||||| |||||||||| || ||||| ||||| ||||||| |||||| | | Sbjct 1223 TGATGGAGCAATGCCGCGTGAGTGAAGAAGGGTTTCGGCTCGTAAAACTCTGTTGTTAGA 1164 Query 372 GAAGA-------------TAA------------TGACGGTACTTGAGGAGGAAGCCCCGG 406 ||||| ||| ||||||| | | || ||| | ||| Sbjct 1163 GAAGAACGGGCGTGAGAGTAACTGCTCACGTCGCGACGGTATCTAACCAGAAAGTCACGG 1104 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 ||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||| | Sbjct 1103 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA-TT 1045 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| | ||| ||| ||| | |||||| Sbjct 1044 GGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTC 1011 Score = 325 bits (360), Expect = 1e-86 Identities = 378/514 (74%), Gaps = 37/514 (7%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| |||| || |||||||||| ||||| |||||||||| | | | |||||||| Sbjct 785250 GAGTGGCGAACTGGTGAGTAACACGTGGATAACCTGCCCAGAAGAAGGGGATAACACCTG 785309 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT-- 139 |||| |||||||||| |||| | || | | |||||| || | |||| | Sbjct 785310 GAAACAGATGCTAATACCGTATAACA-ACGAAAACCACATGGTTTTCGTTTGAAAGATGG 785368 Query 140 --------CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGG 191 | || | |||| || ||||| | |||||||||||||| || ||| || Sbjct 785369 CCTTTGTGCTATCGCTTTTGGATGGATCCGCGGCGCATTAGCTAGTTGGTGAGATAAAGG 785428 Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 || |||||||| | ||| ||||||||||||||||||| |||||||||||||| |||||| Sbjct 785429 CTCACCAAGGCAATGATGCGTAGCCGACCTGAGAGGGTAATCGGCCACATTGGGACTGAG 785488 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||| ||||||||||||||||||||| |||||| || |||||||| | |||| | Sbjct 785489 ACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGAAAGTC 785548 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 ||||| ||||| |||||||||| || ||||| ||||| ||||||| |||||| | | Sbjct 785549 TGATGGAGCAATGCCGCGTGAGTGAAGAAGGGTTTCGGCTCGTAAAACTCTGTTGTTAGA 785608 Query 372 GAAGA-------------TAA------------TGACGGTACTTGAGGAGGAAGCCCCGG 406 ||||| ||| ||||||| | | || ||| | ||| Sbjct 785609 GAAGAACGGGCGTGAGAGTAACTGCTCACGTCGCGACGGTATCTAACCAGAAAGTCACGG 785668 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 ||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||| | Sbjct 785669 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA-TT 785727 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| | ||| ||| ||| | |||||| Sbjct 785728 GGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTC 785761 >seq16 Length=193047 Score = 316 bits (350), Expect = 6e-84 Identities = 376/514 (73%), Gaps = 37/514 (7%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| |||| || |||||||||| ||||| |||||||||| | | | |||||||| Sbjct 1521 GAGTGGCGAACTGGTGAGTAACACGTGGATAACCTGCCCAGAAGAAGGGGATAACACCTG 1462 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT-- 139 |||| |||||||||| |||| | | | | |||||| | | |||| | Sbjct 1461 GAAACAGATGCTAATACCGTATAACA-ATGAAAACCACATGGTTTTCATTTGAAAGATGG 1403 Query 140 --------CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGG 191 | || | |||| || ||||| | |||||||||||||| || ||| || Sbjct 1402 CCTTTGTGCTATCGCTTTTGGATGGATCCGCGGCGCATTAGCTAGTTGGTGAGATAAAGG 1343 Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 || |||||||| | ||| ||||||||||||||||||| |||||||||||||| |||||| Sbjct 1342 CTCACCAAGGCAATGATGCGTAGCCGACCTGAGAGGGTAATCGGCCACATTGGGACTGAG 1283 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||| ||||||||||||||||||||| |||||| || |||||||| | |||| | Sbjct 1282 ACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGAAAGTC 1223 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 ||||| ||||| |||||||||| || ||||| ||||| ||||||| |||||| | | Sbjct 1222 TGATGGAGCAATGCCGCGTGAGTGAAGAAGGGTTTCGGCTCGTAAAACTCTGTTGTTAGA 1163 Query 372 GAAGA-------------TAA------------TGACGGTACTTGAGGAGGAAGCCCCGG 406 ||||| ||| ||||||| | | || ||| | ||| Sbjct 1162 GAAGAACGGGCGTGAGAGTAACTGCTCACGTCGCGACGGTATCTAACCAGAAAGTCACGG 1103 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 ||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||| | Sbjct 1102 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA-TT 1044 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| | ||| ||| ||| | |||||| Sbjct 1043 GGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTC 1010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497523008384