Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4953 405 1e-110 seq16 405 1e-110 >seq4953 Length=802672 Score = 405 bits (448), Expect = 1e-110 Identities = 329/399 (82%), Gaps = 0/399 (0%) Strand=Plus/Minus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||| | |||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 1115 AGAAAGTCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGT 1056 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||| | ||| ||| ||| | |||||| || ||||||| || Sbjct 1055 CCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTT 996 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| |||| | | ||| | ||||||| || |||||||| || || ||||| Sbjct 995 CGGCTTAACCGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGG 936 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 935 AACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGG 876 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || || | ||||||||||| ||||||||||||||| |||| |||||||||||||||||| Sbjct 875 CTGTCTAGTCTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATA 816 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 ||||||||||||| |||||||||||||| | |||||||| || | | | | || | | Sbjct 815 CCCTGGTAGTCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAG 756 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||||||| |||||| |||| | ||| ||||||||||| Sbjct 755 TGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTA 717 Score = 405 bits (448), Expect = 1e-110 Identities = 329/399 (82%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||| | |||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 785657 AGAAAGTCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGT 785716 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||| | ||| ||| ||| | |||||| || ||||||| || Sbjct 785717 CCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTT 785776 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| |||| | | ||| | ||||||| || |||||||| || || ||||| Sbjct 785777 CGGCTTAACCGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGG 785836 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 785837 AACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGG 785896 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || || | ||||||||||| ||||||||||||||| |||| |||||||||||||||||| Sbjct 785897 CTGTCTAGTCTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATA 785956 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 ||||||||||||| |||||||||||||| | |||||||| || | | | | || | | Sbjct 785957 CCCTGGTAGTCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAG 786016 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||||||| |||||| |||| | ||| ||||||||||| Sbjct 786017 TGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTA 786055 >seq16 Length=193047 Score = 405 bits (448), Expect = 1e-110 Identities = 329/399 (82%), Gaps = 0/399 (0%) Strand=Plus/Minus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||| | |||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 1114 AGAAAGTCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGT 1055 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||| | ||| ||| ||| | |||||| || ||||||| || Sbjct 1054 CCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTT 995 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| |||| | | ||| | ||||||| || |||||||| || || ||||| Sbjct 994 CGGCTTAACCGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGG 935 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 934 AACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGG 875 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || || | ||||||||||| ||||||||||||||| |||| |||||||||||||||||| Sbjct 874 CTGTCTAGTCTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATA 815 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 ||||||||||||| |||||||||||||| | |||||||| || | | | | || | | Sbjct 814 CCCTGGTAGTCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAG 755 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||||||| |||||| |||| | ||| ||||||||||| Sbjct 754 TGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTA 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203138143488