Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4765 596 1e-165 seq4678 448 4e-121 >seq4765 Length=3541379 Score = 596 bits (660), Expect = 1e-165 Identities = 1257/1857 (68%), Gaps = 41/1857 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || ||||| ||||||| ||| || | || || ||||| ||||| Sbjct 3010797 TCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTT 3010738 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || |||||||| ||| | || || || || |||| | || |||| || ||||| Sbjct 3010737 TTAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCA 3010678 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCAT 65256 |||||||| || || ||||| |||||||||||||| |||| ||| |||||||| ||||| Sbjct 3010677 GCCACATGAATGTTGAACGATTGACTCTGATCGATA-AACGCACCGCGATCTGCGGCCAT 3010619 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | |||| | || || | || |||||||| || ||||||||||| || || | Sbjct 3010618 TTTAATGGTG-GATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCGAACATTCT 3010560 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 ||||| |||| || | ||||| || ||||| | | ||| || | || ||| Sbjct 3010559 GGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTCATGT 3010500 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || |||||| ||| || | |||| | | | |||| | |||| || |||| Sbjct 3010499 CATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTGGA 3010440 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | |||||||| || || || || |||||| || | ||| || || |||||||| Sbjct 3010439 ATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTCGT 3010380 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||| | || |||||||| ||||| || |||||||| || || | || ||||||| Sbjct 3010379 TGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTC 3010320 Query 65556 GCAATCCGT---TCATT-TCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 | |||| || | || || | | || || | |||||| ||| | |||| Sbjct 3010319 TAACGCCGTGTTTCTTGATCGATTCCTTCA-GC--TTTG-CCCAGTCCCAGA--GGTT-- 3010268 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 ||| | | || | |||||| || | || ||| |||| | || | || || Sbjct 3010267 -CGTGGGTA-CCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCC 3010210 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | | || ||| || || ||| ||| |||| ||| |||| || || || || Sbjct 3010209 TCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCA 3010150 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 |||| || || || || || || |||| || || ||||| ||||| ||||| || Sbjct 3010149 TAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGG 3010090 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 | | |||||| | || | ||||| || || ||||| ||||| || ||||| ||||| Sbjct 3010089 AATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGC 3010030 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 | || ||| || || ||||| || | || || || ||||| || ||||| ||| Sbjct 3010029 CTCATATTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTC 3009970 Query 65912 AAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTTCGAAATCAAAA-TGTTT 65967 | ||| | || | |||| | | | || || || | | ||||| | | ||| Sbjct 3009969 AGATT-CTTGGC--CACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTT 3009913 Query 65968 AGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 ||||| || ||||||| || || || | || || |||||||| Sbjct 3009912 -------TCGGGCGT---------CACAAACATGTTGAGAGCGATGGACGCCAGGTTGCA 3009869 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 ||| || |||||||| || | || |||||||| ||||| ||||||||||| ||||| Sbjct 3009868 GACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTT 3009809 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 |||||||||| |||||| ||||| ||||| | ||||| ||||||||| | | |||||| Sbjct 3009808 GATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTA 3009749 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 |||| |||| ||||| || || | ||| ||||||||| ||| || | | ||||| || Sbjct 3009748 CGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACCACAGGGACTGAGCCTTAAC 3009689 Query 66208 CGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 || || ||| | || | | ||||| | ||| || | || || || || Sbjct 3009688 TGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCC 3009629 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 ||| || || ||| | ||||||||||| || ||||| || ||||| | ||| | Sbjct 3009628 CCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGC 3009569 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 || || || |||||| ||||| |||||||||||||| ||||| |||||||| || || Sbjct 3009568 CTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACG 3009509 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 | |||||| ||||| || || || || | |||||| |||| || | ||||| Sbjct 3009508 ATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCA 3009449 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || |||| |||||||| || | || || ||||||||||| ||||| ||||| || Sbjct 3009448 GGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCG 3009389 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| |||||||||||||| |||| ||| || ||||| || || || ||||||| ||||| Sbjct 3009388 AGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCC 3009329 Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGT 66627 |||| | || || || || || |||||||| ||||| || || |||| Sbjct 3009328 ACATATGGAAGTGCCCTTGGCACGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGA 3009269 Query 66628 CTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTT 66687 ||| ||||| ||||| | |||| | | || ||||| || || || || | Sbjct 3009268 CTTGGAGATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGT 3009209 Query 66688 GATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGT 66747 |||||||||||| |||| || || || || | ||||| || | ||| ||||| Sbjct 3009208 CATGGTCAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGT 3009149 Query 66748 GGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATC 66807 ||| | ||||| || ||| | | |||| ||||||| ||||| | | ||||| Sbjct 3009148 GGGCGAGGCGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATC 3009089 Query 66808 AATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGAC 66867 |||| ||| ||||| || || | || |||||||| | || || ||||| ||| | Sbjct 3009088 GATGTCTTCACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGC 3009029 Query 66868 CAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | | | || | | || || || || || ||||||||||||| ||||||||| Sbjct 3009028 AATCTTACCGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTA 3008972 >seq4678 Length=1229792 Score = 448 bits (496), Expect = 4e-121 Identities = 611/845 (72%), Gaps = 11/845 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || ||||||||||| ||||| ||||| || |||||||| || | | |||| Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCGACT 1146883 Query 61166 GGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 || | || ||| || | |||| || ||||| |||||| |||| ||||||||| Sbjct 1146882 GGCATCGCCTTAAGGAT-GACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTTGCC 1146824 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGT 61283 || || || ||||| ||||| |||||| | |||| || ||| || |||||||| || | Sbjct 1146823 GCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGC-CAGGAGGTACAGAT 1146765 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343 | ||||| || || || || ||||||||||| ||||||||||| || || |||||||| Sbjct 1146764 CACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGAGAT 1146705 Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAA 61403 ||||||||| || ||||| || ||||| |||| | | || ||| ||||||| Sbjct 1146704 GTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGGGAATATCTGTTCAA 1146645 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC 61463 |||||| ||||| || |||||||||||||| || || || |||||| | |||||| | Sbjct 1146644 TGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCCCTGTCCTGGATCTC 1146585 Query 61464 CAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 | ||| |||| | ||||| || || | | || ||||| | |||||||| | Sbjct 1146584 T--TCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGAGGGCATT 1146527 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||||| || |||||| | || || ||| ||||||| || || || ||||| ||| Sbjct 1146526 TTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGT 1146467 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 |||||||| ||||||| |||| || ||||| ||||| |||| ||||| ||||| || Sbjct 1146466 TTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGTGACTTTGCGGTG 1146407 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || | ||| | | |||||||| | || ||| | ||||| | ||||| | Sbjct 1146406 CTGATGTTCCAGC---ATCTGGTGCAGCGACCGAGGCGCGAGCGCATCATCGAGATCATC 1146350 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || || || || || || ||||| || || || || || |||| || || ||| Sbjct 1146349 CGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCCGGTTAATCTGATC 1146290 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| |||| || ||||||||||| ||||| ||||| ||||| |||||| ||||| Sbjct 1146289 GGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTCTGCTGGTC 1146230 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 || |||| || |||||| || || || || || || | |||||||| ||||| Sbjct 1146229 GAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTCAACTTCATGGAGATGATC 1146170 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGT 61941 ||||||||||||||||| || || || ||||| || ||||| ||||| || |||| Sbjct 1146169 TCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGCGAGTATCAGCGCATGGGC 1146110 Query 61942 GTAGC 61946 || || Sbjct 1146109 GTGGC 1146105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397543090004240