Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq4583 95.1 4e-15 >seq4583 Length=779074 Score = 95.1 bits (104), Expect = 4e-15 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 29758 GTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTG 29817 || ||||| ||||||||||||||| || |||||| || || || |||||||| || Sbjct 68577 GTCGGGATCAGCCAGGGCTGGAAAATGACCGGGGCTATCAAGACGCTGGAGCGCAAGCTA 68636 Query 29818 GCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCC 29877 || || || | | ||||| | | || | ||||| ||| ||||||||||| Sbjct 68637 GCAGATGGCACGTTTTCCCATGGGGCACGTCCGATCATGGCTTGGGCGGTCGGCAATGCA 68696 Query 29878 CGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAG---GCCAGTGGACGGGGA 29934 || | || |||| || ||| || |||||||| ||| || ||||| | Sbjct 68697 AAGGCGCAGGCTAAGGGCAACAATATCGAAATCACCAAGCAGATGGCAGGTGGAAAG--- 68753 Query 29935 AAAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTTAACCCGGAA 29994 ||||| |||||||||||||||||||| |||| || || ||| || ||||||||| Sbjct 68754 AAAATCGACCCGCTGATGGCGCTGTTTGATGCCGTGGCCTGCATGAGCCGGAACCCGGAA 68813 Query 29995 CC 29996 || Sbjct 68814 CC 68815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175534883050836