Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq4953 560 3e-155 seq16 104 7e-18 seq4583 95.1 4e-15 >seq4953 Length=802672 Score = 560 bits (620), Expect = 3e-155 Identities = 920/1308 (70%), Gaps = 34/1308 (3%) Strand=Plus/Minus Query 1669 ATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACA 1728 |||||||||||| ||||| | || || || ||||| | || ||||| ||||| ||||| Sbjct 131761 ATGTCAATTATTTCTGATATTTATGCTCGCGAAGTGTTGGATTCACGTGGTAATCCAACT 131702 Query 1729 CTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGA 1788 |||||| ||||||||||| ||| |||||| | || || || || || || ||||| Sbjct 131701 GTTGAAGCTGAAGTTTACACAGAAGACGGTGCAATGGGCCGTGGAATCGTCCCATCAGGT 131642 Query 1789 GCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGT 1848 || ||||| |||||||||||||| || ||||||||||| || |||||| | | || | Sbjct 131641 GCCTCAACCGGTGAACACGAAGCTGTTGAACTTCGTGACGGAGACAAAAATAGATATA-T 131583 Query 1849 GGTCT----TGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACAT 1904 || | || |||| ||||| ||| ||||| |||||| | ||||| | | || Sbjct 131582 GGGCAAAGGTGTTACT---AAAGCTGTTAGCAACGTTAACAACATCATTGCAAAAAAAAT 131526 Query 1905 CATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGG 1964 | | || || || ||| ||||||| ||||||||||| || |||||| ||||| || Sbjct 131525 CGTTGGTTTTGATGTAACTGATCAATTAGGTATTGACCAAGCTATGATCAAGCTTGATGG 131466 Query 1965 TACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGG-TGTGTCTATCGCTGTAG 2023 |||||| ||||||| ||| | ||||| ||||| || |||| ||| || || |||| | Sbjct 131465 TACTCCTAACAAAGCTAAGTTAGGTGCTAACGCAAT-CTTGTCTGTTTCAATTGCTGCTG 131407 Query 2024 CACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACA 2083 | | || || || ||| | |||| |||||| | || | |||| | || || ||| | Sbjct 131406 CTAGAGCCGCAGCCGACGAACTTGGTGTTCCATTGTATAACTACTTAGGTGGTTTCGATG 131347 Query 2084 CTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTC 2143 | | |||||||||||||||||||||||| | ||||| |||||| || | | | Sbjct 131346 CACATGTTCTTCCAACTCCAATGATGAACGTTATCAATGGTGGTAAGCATGCTAA--CAA 131289 Query 2144 CAA--TCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGC 2201 ||| | | |||||||||||| |||||| | || ||||||| |||||| | |||||| Sbjct 131288 CAAGGTTGATTTCCAAGAATTCATGATTATGCCAATTGGTGCAAAAACATTTAGAGAAGC 131229 Query 2202 GCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACT 2261 |||| ||| | |||| ||||| | ||| ||| | |||||||||| Sbjct 131228 CGTTCGGATGGGATCAGAAACTTTCCATAACTTAAAGGCTATCTTGGCAGAACGTGGATA 131169 Query 2262 TGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGA-ACTGAAGATG 2320 ||| || || ||||| |||||||| || |||||| | || || | | | ||||| Sbjct 131168 CTCAACCGCTGTTGGTGATGAAGGTGGATTTGCACCT-GATTTGAAGAATAACGAAGAGC 131110 Query 2321 GTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTAT 2380 |||||| | | ||||||| || ||||||||| || ||||| ||| | | Sbjct 131109 CATTTGAAATCTTAGTTGAAGCTATTAAACGTGCTGGATACAAGCCTGGTAAGGACATTT 131050 Query 2381 TTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACT 2440 || | |||||||||| | || ||||| ||| | || || ||| ||| || Sbjct 131049 CAATTGCCTTTGACTGTGCGGCTTCAGAATTTTACAACGCTGACACTAAGAAGTACAAC- 130991 Query 2441 ACACTAAAT-TTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTAC 2499 || | ||| ||| ||| | | | ||||||| ||| ||| | Sbjct 130990 ---CTGGTTGGTGACGGT-AAGTC-ATAC-------ACTGCTGATGAATTCATCACTTTA 130943 Query 2500 CTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAAC 2559 ||||| ||| | ||| |||| |||||||||||| | |||||||| |||| |||||| Sbjct 130942 CTTGATGAAATCGTTGACAAGTACCCAATCATCTCAATCGAAGACCCATTGGATGAAAAC 130883 Query 2560 GACTGGGACGGTTGG-AAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGG 2618 || ||||| | |||| |||| | |||| |||| | ||| ||||||||| | ||||| Sbjct 130882 GAATGGGAAGATTGGCAAATGGC-TACTAAACGCTTAGGTAAGAAAGTTCAAGTTGTTGG 130824 Query 2619 TGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGA-ACACGCTG 2677 ||| || || ||||| |||||||||| ||| | ||| |||| | ||| ||| || Sbjct 130823 TGATGATTTGTTCGTTACTAACACTGAATACTTATCAAAGGGTA-TCAAGATGAACGTTG 130765 Query 2678 CTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTA 2737 ||||||||||| | |||||| ||||||||||||||||||| ||||||||| || | || Sbjct 130764 CTAACTCAATCTTGATCAAACTTAACCAAATCGGTACTTTAACTGAAACTGTTAATGCCG 130705 Query 2738 TCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTG 2797 | | ||||| || |||||| | ||||| ||| | | || |||||||| |||||||||| Sbjct 130704 TTAACATGGCTAAGGAAGCTAGTTACACTGCAATTATTTCTCACCGTTCTGGTGAAACTG 130645 Query 2798 AAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTT 2857 ||||| | || || | || | | ||||| ||| |||| ||||| ||||| |||| Sbjct 130644 AAGATACCACTATTTCAGACTTAGTTGTTGCTTTAAACACTGGCCAAATCAAGACTGGTT 130585 Query 2858 CATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAAC 2917 || || ||| ||| | |||||||| ||||| |||||| | | || ||||| ||| Sbjct 130584 CAATGAGCCGTGGTGAAAGAATTGCTAAGTACAATCAATTGATGAGAATTGAAGATCAAT 130525 Query 2918 TTGGTGAAGTTGCAGAATACCGTGGTTTGAAATCATTCTACAACTTGA 2965 | || |||||| | ||| || | || |||||||||||||||| Sbjct 130524 TAGGATCAGTTGCTGTGTACAAAGGAATTAACTCATTCTACAACTTGA 130477 >seq16 Length=193047 Score = 104 bits (114), Expect = 7e-18 Identities = 486/750 (65%), Gaps = 44/750 (6%) Strand=Plus/Minus Query 45146 CCGTAGTGGTCACCATACATAACAATAATCGAATTATCATAAAGGCCAGTTTCCTTAAGG 45205 || ||||| || ||||||| ||| || | ||||| | | ||||| | | |||||| Sbjct 111396 CCATAGTGATCTCCATACAGAACGATGACGGAATTCTTAAGGAGGCCGGCCTTATTAAGG 111337 Query 45206 TAATCAAAGAAGTCTT----TGATTGCAGAGTCAAGATAGTTGGCTGTTGCAAAATACCC 45261 || | | || || | |||||| ||| ||||||| || ||| |||| || Sbjct 111336 TAGGCGTACAATTCCTGAACTGATTG----GTCCAGATAGTGAGCCGTTACAAAGTAGTT 111281 Query 45262 GTTAACTGTTTCGTCTTTTGTGTCAGCGAGTGGGAAACCTTGT-TCGTTTTTGTCGCCTG 45320 ||| || | || ||| || ||||| | ||| ||| | || |||| || || Sbjct 111280 GTTGACGGCTTGGTCATTGGTGTCTG-GAGCCTTAAAGTCAGAATCCTTTTGATC--CTC 111224 Query 45321 ACAGGGAAG-TG-TATGGGTAGTGGTTAGATACGGTTAGGTATTTAACATAGAAAGGCTG 45378 | | ||| || || ||| |||| |||| || || | ||| ||| | ||||| || || Sbjct 111223 ATCGTCAAGCTGATAAGGGAAGTGATTAGTAACTGTAATGTACTTAGCGTAGAACGGTTG 111164 Query 45379 TTGCATTTGTTCCAGATATTTGATGGAATCTGAAAACATGTACTTATCATTAAGACCGTA 45438 ||||| |||| || || || | |||||| ||| | ||||||| || | || || Sbjct 111163 TTGCAAGTGTTGGAGGTACTTCGTTGAATCTCTAAAGAGTAACTTATCCTTTAATCCATA 111104 Query 45439 TTGGAAGGAGTTTTCATCGGTTTTCTCAGTGAAAGCTGATGAGTCAAAGAAGTAGTTATA 45498 | | ||| || ||| ||| | ||| | | ||| | || |||||||| | || Sbjct 111103 TCCGGTGGACTTATCACCGGAAGTGTCATAGTA-GCTC--GCATCGAAGAAGTAATCGTA 111047 Query 45499 ACCCCAATGTTTATAGGTATTATTGCGGTTCCAGAAGGATCCAGTGTTTCCGTGGAAAAC 45558 |||| | | ||||| || ||||| |||||||||||| || |||||| ||||| || Sbjct 111046 ACCCAAGTTCTTATACGTGTTATTCCGGTTCCAGAAGCTAGCAACGTTTCCATGGAAGAC 110987 Query 45559 AGCTGAAGTATAGCCACTCGTTTGAGCTAGGATAGATGGTGCAGC--GTAAGCTGTATTG 45616 || || || || || | ||||| | || || | || || | | ||| || ||| Sbjct 110986 GGCGGACGTGTATCC---CTTTTGACCCAGAATGGCAGGAGCCCCCTGGAAG--GTGTTG 110932 Query 45617 GTACCACCGTAGTTTACCATATATG--ACCCTGTACTTAGTCCGAAGAGTGAT-GTTTCC 45673 || || |||| | | | | |||||| || ||| || || | ||||| Sbjct 110931 TCACTTCC-AAGTTGGGCGAAAAGGGATCCCTGT-GGTAATCCATAG-GTACTGGTTTCG 110875 Query 45674 ATCAAGGTTTCAGCATCAGAAGTTTTTCCTGATTTAACTTGGTGGAAGAAGTT-TGAAAA 45732 | || |||| ||||| ||||| |||||| | ||||| ||||||||||| | ||| Sbjct 110874 AGCATATTTTCGGCATCGGAAGTCTTTCCTTGTCCTACTTGATGGAAGAAGTTATCAAAT 110815 Query 45733 GGCTAGGGTTTCATTTGAGTGGTAAATGGAATTAAGGAATGGTGTTACTTCATAAGACTG 45792 | || |||| || ||| || | |||||||| || |||||||| ||| Sbjct 110814 GAATA-GGTTGACTTACTGTGATACAGCTTGTTAAGGAAAGGAGTTACTTC------CTG 110762 Query 45793 ACCATCTACTTGGAGCTTGTAATCAATAAGAAACTGTTGGAAACTCTCCAAGTGAATAAC 45852 || | || || || | |||||| |||||||| ||||| || | ||||| | Sbjct 110761 TCCGT-TAATT-----TTTTTATCAATTGTGAACTGTTGAAAACTTTCTAGATGAATGAT 110708 Query 45853 GATAACGTTTCTTCCTTTAGCAATTCCGTA 45882 ||| |||||| | || ||||| || || || Sbjct 110707 GATGACGTTTTTACCCTTAGCCATCCCATA 110678 >seq4583 Length=779074 Score = 95.1 bits (104), Expect = 4e-15 Identities = 289/440 (66%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 1692 CGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGA 1751 |||||||||| | || ||| ||||| |||||||| |||||||||| || | | Sbjct 236335 CGCACGTGAAATTCTGGACAGCCGCGGCAACCCAACGGTTGAAGTAGATGTGGAGCTGGC 236394 Query 1752 ATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGC 1811 ||| || || || || | |||||||| || || ||||| |||| || ||||| Sbjct 236395 ATCCGGCGCCAGAGGGCGTGCGGCTGTTCCTTCTGGTGCCTCAACCGGTGCGCATGAAGC 236454 Query 1812 AGTAGAACTTCGTGATGGTGA--CAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCA 1869 |||||||| ||||||||||| | ||| || | ||||| ||| || || || Sbjct 236455 CGTAGAACTGCGTGATGGTGACCCCAAG--CGGTTTGGTGGCAAGGGTGTTCTCAAGGCT 236512 Query 1870 GTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTA-CG--TGAT 1926 ||||| ||| | | |||| | | ||| ||| | || | | || | || ||| Sbjct 236513 GTTGAGAACATTGAAAACG-AAATCCTGCCCACGCTACAGGGT--GCCGAATCGGCAGAT 236569 Query 1927 CAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTT 1986 || | ||| ||| ||| ||||| | ||| || || || || |||||| | | Sbjct 236570 CAGATTGATATCGACAACGCCATGATTGATCTGGATGGCACACCCAACAAAAGCCGTATG 236629 Query 1987 GGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTT 2046 ||||| ||||| ||||| ||||| ||| | || | || || | || | | | || Sbjct 236630 GGTGCGAACGCCATTCTGGGTGTATCTCTTGCCATTGCCAAAGCCACGGCAGCCGAACTG 236689 Query 2047 GAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATG 2106 | ||||| || ||| ||||| |||| || | | | ||||| || || ||| Sbjct 236690 CATGTTCCGCTGTACCGCTACATTGGTGGCGTGTTTGCCCATGTTCTGCCCGTGCCGATG 236749 Query 2107 ATGAACATCATCAACGGTGG 2126 |||||||| |||||||||| Sbjct 236750 ATGAACATTGTCAACGGTGG 236769 Score = 89.7 bits (98), Expect = 2e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 || |||||||| || ||||| | || ||||| |||| || | ||||||| | Sbjct 237320 AAGGTTAACCAGATTGGTACGCTTACGGAAACGCTTGAAGCCGTGCAAATGGCCCAGCGC 237379 Query 2755 GCTGGATACACAGCAGTAGTATCA--CACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 ||||| ||||| || || ||| | || ||||| |||||||| |||||||| || || | Sbjct 237380 GCTGGTTACACTGCGGT--TATGAGCCATCGTTCTGGTGAAACGGAAGATTCCACCATTG 237437 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | ||| | || || || || || || || || || || || || | || ||| ||| Sbjct 237438 CGGATCTGGCTGTGGCTACAAATTGCGGACAGATCAAAACCGGCTCTCTTTCCCGTTCTG 237497 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 | || | || ||||||||||| | ||||||| || Sbjct 237498 ATCGGACAGCCAAATACAACCAGCTCATTCGTATTGA 237534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156028873953204