Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq4953 560 3e-155
seq16 104 7e-18
seq4583 95.1 4e-15
>seq4953
Length=802672
Score = 560 bits (620), Expect = 3e-155
Identities = 920/1308 (70%), Gaps = 34/1308 (3%)
Strand=Plus/Minus
Query 1669 ATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACA 1728
|||||||||||| ||||| | || || || ||||| | || ||||| ||||| |||||
Sbjct 131761 ATGTCAATTATTTCTGATATTTATGCTCGCGAAGTGTTGGATTCACGTGGTAATCCAACT 131702
Query 1729 CTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGA 1788
|||||| ||||||||||| ||| |||||| | || || || || || || |||||
Sbjct 131701 GTTGAAGCTGAAGTTTACACAGAAGACGGTGCAATGGGCCGTGGAATCGTCCCATCAGGT 131642
Query 1789 GCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGT 1848
|| ||||| |||||||||||||| || ||||||||||| || |||||| | | || |
Sbjct 131641 GCCTCAACCGGTGAACACGAAGCTGTTGAACTTCGTGACGGAGACAAAAATAGATATA-T 131583
Query 1849 GGTCT----TGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACAT 1904
|| | || |||| ||||| ||| ||||| |||||| | ||||| | | ||
Sbjct 131582 GGGCAAAGGTGTTACT---AAAGCTGTTAGCAACGTTAACAACATCATTGCAAAAAAAAT 131526
Query 1905 CATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGG 1964
| | || || || ||| ||||||| ||||||||||| || |||||| ||||| ||
Sbjct 131525 CGTTGGTTTTGATGTAACTGATCAATTAGGTATTGACCAAGCTATGATCAAGCTTGATGG 131466
Query 1965 TACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGG-TGTGTCTATCGCTGTAG 2023
|||||| ||||||| ||| | ||||| ||||| || |||| ||| || || |||| |
Sbjct 131465 TACTCCTAACAAAGCTAAGTTAGGTGCTAACGCAAT-CTTGTCTGTTTCAATTGCTGCTG 131407
Query 2024 CACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACA 2083
| | || || || ||| | |||| |||||| | || | |||| | || || ||| |
Sbjct 131406 CTAGAGCCGCAGCCGACGAACTTGGTGTTCCATTGTATAACTACTTAGGTGGTTTCGATG 131347
Query 2084 CTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTC 2143
| | |||||||||||||||||||||||| | ||||| |||||| || | | |
Sbjct 131346 CACATGTTCTTCCAACTCCAATGATGAACGTTATCAATGGTGGTAAGCATGCTAA--CAA 131289
Query 2144 CAA--TCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGC 2201
||| | | |||||||||||| |||||| | || ||||||| |||||| | ||||||
Sbjct 131288 CAAGGTTGATTTCCAAGAATTCATGATTATGCCAATTGGTGCAAAAACATTTAGAGAAGC 131229
Query 2202 GCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACT 2261
|||| ||| | |||| ||||| | ||| ||| | ||||||||||
Sbjct 131228 CGTTCGGATGGGATCAGAAACTTTCCATAACTTAAAGGCTATCTTGGCAGAACGTGGATA 131169
Query 2262 TGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGA-ACTGAAGATG 2320
||| || || ||||| |||||||| || |||||| | || || | | | |||||
Sbjct 131168 CTCAACCGCTGTTGGTGATGAAGGTGGATTTGCACCT-GATTTGAAGAATAACGAAGAGC 131110
Query 2321 GTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTAT 2380
|||||| | | ||||||| || ||||||||| || ||||| ||| | |
Sbjct 131109 CATTTGAAATCTTAGTTGAAGCTATTAAACGTGCTGGATACAAGCCTGGTAAGGACATTT 131050
Query 2381 TTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACT 2440
|| | |||||||||| | || ||||| ||| | || || ||| ||| ||
Sbjct 131049 CAATTGCCTTTGACTGTGCGGCTTCAGAATTTTACAACGCTGACACTAAGAAGTACAAC- 130991
Query 2441 ACACTAAAT-TTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTAC 2499
|| | ||| ||| ||| | | | ||||||| ||| ||| |
Sbjct 130990 ---CTGGTTGGTGACGGT-AAGTC-ATAC-------ACTGCTGATGAATTCATCACTTTA 130943
Query 2500 CTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAAC 2559
||||| ||| | ||| |||| |||||||||||| | |||||||| |||| ||||||
Sbjct 130942 CTTGATGAAATCGTTGACAAGTACCCAATCATCTCAATCGAAGACCCATTGGATGAAAAC 130883
Query 2560 GACTGGGACGGTTGG-AAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGG 2618
|| ||||| | |||| |||| | |||| |||| | ||| ||||||||| | |||||
Sbjct 130882 GAATGGGAAGATTGGCAAATGGC-TACTAAACGCTTAGGTAAGAAAGTTCAAGTTGTTGG 130824
Query 2619 TGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGA-ACACGCTG 2677
||| || || ||||| |||||||||| ||| | ||| |||| | ||| ||| ||
Sbjct 130823 TGATGATTTGTTCGTTACTAACACTGAATACTTATCAAAGGGTA-TCAAGATGAACGTTG 130765
Query 2678 CTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTA 2737
||||||||||| | |||||| ||||||||||||||||||| ||||||||| || | ||
Sbjct 130764 CTAACTCAATCTTGATCAAACTTAACCAAATCGGTACTTTAACTGAAACTGTTAATGCCG 130705
Query 2738 TCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTG 2797
| | ||||| || |||||| | ||||| ||| | | || |||||||| ||||||||||
Sbjct 130704 TTAACATGGCTAAGGAAGCTAGTTACACTGCAATTATTTCTCACCGTTCTGGTGAAACTG 130645
Query 2798 AAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTT 2857
||||| | || || | || | | ||||| ||| |||| ||||| ||||| ||||
Sbjct 130644 AAGATACCACTATTTCAGACTTAGTTGTTGCTTTAAACACTGGCCAAATCAAGACTGGTT 130585
Query 2858 CATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAAC 2917
|| || ||| ||| | |||||||| ||||| |||||| | | || ||||| |||
Sbjct 130584 CAATGAGCCGTGGTGAAAGAATTGCTAAGTACAATCAATTGATGAGAATTGAAGATCAAT 130525
Query 2918 TTGGTGAAGTTGCAGAATACCGTGGTTTGAAATCATTCTACAACTTGA 2965
| || |||||| | ||| || | || ||||||||||||||||
Sbjct 130524 TAGGATCAGTTGCTGTGTACAAAGGAATTAACTCATTCTACAACTTGA 130477
>seq16
Length=193047
Score = 104 bits (114), Expect = 7e-18
Identities = 486/750 (65%), Gaps = 44/750 (6%)
Strand=Plus/Minus
Query 45146 CCGTAGTGGTCACCATACATAACAATAATCGAATTATCATAAAGGCCAGTTTCCTTAAGG 45205
|| ||||| || ||||||| ||| || | ||||| | | ||||| | | ||||||
Sbjct 111396 CCATAGTGATCTCCATACAGAACGATGACGGAATTCTTAAGGAGGCCGGCCTTATTAAGG 111337
Query 45206 TAATCAAAGAAGTCTT----TGATTGCAGAGTCAAGATAGTTGGCTGTTGCAAAATACCC 45261
|| | | || || | |||||| ||| ||||||| || ||| |||| ||
Sbjct 111336 TAGGCGTACAATTCCTGAACTGATTG----GTCCAGATAGTGAGCCGTTACAAAGTAGTT 111281
Query 45262 GTTAACTGTTTCGTCTTTTGTGTCAGCGAGTGGGAAACCTTGT-TCGTTTTTGTCGCCTG 45320
||| || | || ||| || ||||| | ||| ||| | || |||| || ||
Sbjct 111280 GTTGACGGCTTGGTCATTGGTGTCTG-GAGCCTTAAAGTCAGAATCCTTTTGATC--CTC 111224
Query 45321 ACAGGGAAG-TG-TATGGGTAGTGGTTAGATACGGTTAGGTATTTAACATAGAAAGGCTG 45378
| | ||| || || ||| |||| |||| || || | ||| ||| | ||||| || ||
Sbjct 111223 ATCGTCAAGCTGATAAGGGAAGTGATTAGTAACTGTAATGTACTTAGCGTAGAACGGTTG 111164
Query 45379 TTGCATTTGTTCCAGATATTTGATGGAATCTGAAAACATGTACTTATCATTAAGACCGTA 45438
||||| |||| || || || | |||||| ||| | ||||||| || | || ||
Sbjct 111163 TTGCAAGTGTTGGAGGTACTTCGTTGAATCTCTAAAGAGTAACTTATCCTTTAATCCATA 111104
Query 45439 TTGGAAGGAGTTTTCATCGGTTTTCTCAGTGAAAGCTGATGAGTCAAAGAAGTAGTTATA 45498
| | ||| || ||| ||| | ||| | | ||| | || |||||||| | ||
Sbjct 111103 TCCGGTGGACTTATCACCGGAAGTGTCATAGTA-GCTC--GCATCGAAGAAGTAATCGTA 111047
Query 45499 ACCCCAATGTTTATAGGTATTATTGCGGTTCCAGAAGGATCCAGTGTTTCCGTGGAAAAC 45558
|||| | | ||||| || ||||| |||||||||||| || |||||| ||||| ||
Sbjct 111046 ACCCAAGTTCTTATACGTGTTATTCCGGTTCCAGAAGCTAGCAACGTTTCCATGGAAGAC 110987
Query 45559 AGCTGAAGTATAGCCACTCGTTTGAGCTAGGATAGATGGTGCAGC--GTAAGCTGTATTG 45616
|| || || || || | ||||| | || || | || || | | ||| || |||
Sbjct 110986 GGCGGACGTGTATCC---CTTTTGACCCAGAATGGCAGGAGCCCCCTGGAAG--GTGTTG 110932
Query 45617 GTACCACCGTAGTTTACCATATATG--ACCCTGTACTTAGTCCGAAGAGTGAT-GTTTCC 45673
|| || |||| | | | | |||||| || ||| || || | |||||
Sbjct 110931 TCACTTCC-AAGTTGGGCGAAAAGGGATCCCTGT-GGTAATCCATAG-GTACTGGTTTCG 110875
Query 45674 ATCAAGGTTTCAGCATCAGAAGTTTTTCCTGATTTAACTTGGTGGAAGAAGTT-TGAAAA 45732
| || |||| ||||| ||||| |||||| | ||||| ||||||||||| | |||
Sbjct 110874 AGCATATTTTCGGCATCGGAAGTCTTTCCTTGTCCTACTTGATGGAAGAAGTTATCAAAT 110815
Query 45733 GGCTAGGGTTTCATTTGAGTGGTAAATGGAATTAAGGAATGGTGTTACTTCATAAGACTG 45792
| || |||| || ||| || | |||||||| || |||||||| |||
Sbjct 110814 GAATA-GGTTGACTTACTGTGATACAGCTTGTTAAGGAAAGGAGTTACTTC------CTG 110762
Query 45793 ACCATCTACTTGGAGCTTGTAATCAATAAGAAACTGTTGGAAACTCTCCAAGTGAATAAC 45852
|| | || || || | |||||| |||||||| ||||| || | ||||| |
Sbjct 110761 TCCGT-TAATT-----TTTTTATCAATTGTGAACTGTTGAAAACTTTCTAGATGAATGAT 110708
Query 45853 GATAACGTTTCTTCCTTTAGCAATTCCGTA 45882
||| |||||| | || ||||| || || ||
Sbjct 110707 GATGACGTTTTTACCCTTAGCCATCCCATA 110678
>seq4583
Length=779074
Score = 95.1 bits (104), Expect = 4e-15
Identities = 289/440 (66%), Gaps = 10/440 (2%)
Strand=Plus/Plus
Query 1692 CGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGA 1751
|||||||||| | || ||| ||||| |||||||| |||||||||| || | |
Sbjct 236335 CGCACGTGAAATTCTGGACAGCCGCGGCAACCCAACGGTTGAAGTAGATGTGGAGCTGGC 236394
Query 1752 ATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGC 1811
||| || || || || | |||||||| || || ||||| |||| || |||||
Sbjct 236395 ATCCGGCGCCAGAGGGCGTGCGGCTGTTCCTTCTGGTGCCTCAACCGGTGCGCATGAAGC 236454
Query 1812 AGTAGAACTTCGTGATGGTGA--CAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCA 1869
|||||||| ||||||||||| | ||| || | ||||| ||| || || ||
Sbjct 236455 CGTAGAACTGCGTGATGGTGACCCCAAG--CGGTTTGGTGGCAAGGGTGTTCTCAAGGCT 236512
Query 1870 GTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTA-CG--TGAT 1926
||||| ||| | | |||| | | ||| ||| | || | | || | || |||
Sbjct 236513 GTTGAGAACATTGAAAACG-AAATCCTGCCCACGCTACAGGGT--GCCGAATCGGCAGAT 236569
Query 1927 CAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTT 1986
|| | ||| ||| ||| ||||| | ||| || || || || |||||| | |
Sbjct 236570 CAGATTGATATCGACAACGCCATGATTGATCTGGATGGCACACCCAACAAAAGCCGTATG 236629
Query 1987 GGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTT 2046
||||| ||||| ||||| ||||| ||| | || | || || | || | | | ||
Sbjct 236630 GGTGCGAACGCCATTCTGGGTGTATCTCTTGCCATTGCCAAAGCCACGGCAGCCGAACTG 236689
Query 2047 GAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATG 2106
| ||||| || ||| ||||| |||| || | | | ||||| || || |||
Sbjct 236690 CATGTTCCGCTGTACCGCTACATTGGTGGCGTGTTTGCCCATGTTCTGCCCGTGCCGATG 236749
Query 2107 ATGAACATCATCAACGGTGG 2126
|||||||| ||||||||||
Sbjct 236750 ATGAACATTGTCAACGGTGG 236769
Score = 89.7 bits (98), Expect = 2e-13
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754
|| |||||||| || ||||| | || ||||| |||| || | ||||||| |
Sbjct 237320 AAGGTTAACCAGATTGGTACGCTTACGGAAACGCTTGAAGCCGTGCAAATGGCCCAGCGC 237379
Query 2755 GCTGGATACACAGCAGTAGTATCA--CACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812
||||| ||||| || || ||| | || ||||| |||||||| |||||||| || || |
Sbjct 237380 GCTGGTTACACTGCGGT--TATGAGCCATCGTTCTGGTGAAACGGAAGATTCCACCATTG 237437
Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872
| ||| | || || || || || || || || || || || || | || ||| |||
Sbjct 237438 CGGATCTGGCTGTGGCTACAAATTGCGGACAGATCAAAACCGGCTCTCTTTCCCGTTCTG 237497
Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909
| || | || ||||||||||| | ||||||| ||
Sbjct 237498 ATCGGACAGCCAAATACAACCAGCTCATTCGTATTGA 237534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156028873953204
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