Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq4969 109 2e-18 seq4903 91.5 6e-13 >seq4969 Length=1161901 Score = 109 bits (120), Expect = 2e-18 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || ||||| ||||||||||| ||||| |||| | || || ||| || Sbjct 226130 AGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTTCACCTCGAACTCCACGT 226071 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACT-GTCGACGACCCCG 21833 | ||||||||||| ||||| || || | ||||| | | || || ||| || || ||| Sbjct 226070 CCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGT-AGTCCTCGTCCACCACGCCG 226012 Query 21834 GCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAG 21893 || || ||||||| |||||||| ||||||||| || | || || ||||| |||||| Sbjct 226011 GCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGTGGGGCCACGCGTCCGTAG 225952 Query 21894 TGGCCCT 21900 ||||| Sbjct 225951 GAGCCCT 225945 >seq4903 Length=2073822 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 349081 AATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTG 349140 |||||||||||||| ||||| |||||||| |||||||| | | ||| || ||||| || Sbjct 75722 AATCTCCTTGAGTCGGGGCACACCCAGGGTTACGTTCTTTGAGGAGACACCAGCAAAATG 75781 Query 349141 GAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCC 349200 ||| || | ||||||| ||| ||| ||||| || | | ||| | || | | || Sbjct 75782 GAAAGTGTTTAGGGTCATCTGAGTGGCAGGCTCACCCAAACTTTGGGCAGCCAAGGCACC 75841 Query 349201 TACCATCTCGCCGGG 349215 |||||||||||||| Sbjct 75842 AACCATCTCGCCGGG 75856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084598530919518