Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1869 132 9e-29 seq1 131 3e-28 seq750 127 4e-27 seq305 122 2e-25 seq941 114 2e-23 seq94 77.0 6e-12 >seq1869 Length=76973 Score = 132 bits (146), Expect = 9e-29 Identities = 191/261 (73%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 44299 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 44358 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC 179 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || | Sbjct 44359 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCA 44417 Query 180 -GCCGTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||||||||| ||| ||||| | |||||| | |||||||||| Sbjct 44418 AGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAA 44477 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||| |||||||||| |||||||| || |||| |||||||||||||| Sbjct 44478 TTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAA 44537 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 44538 TCA-AGAACGAAAGTTAGAGG 44557 Score = 132 bits (146), Expect = 9e-29 Identities = 191/261 (73%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 56780 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 56839 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC 179 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || | Sbjct 56840 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCA 56898 Query 180 -GCCGTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||||||||| ||| ||||| | |||||| | |||||||||| Sbjct 56899 AGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAA 56958 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||| |||||||||| |||||||| || |||| |||||||||||||| Sbjct 56959 TTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAA 57018 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 57019 TCA-AGAACGAAAGTTAGAGG 57038 Score = 132 bits (146), Expect = 9e-29 Identities = 191/261 (73%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 68483 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 68542 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC 179 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || | Sbjct 68543 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCA 68601 Query 180 -GCCGTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||||||||| ||| ||||| | |||||| | |||||||||| Sbjct 68602 AGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAA 68661 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||| |||||||||| |||||||| || |||| |||||||||||||| Sbjct 68662 TTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAA 68721 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 68722 TCA-AGAACGAAAGTTAGAGG 68741 >seq1 Length=23542271 Score = 131 bits (144), Expect = 3e-28 Identities = 193/265 (73%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCG 117 ||| ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| | Sbjct 23432795 GGGGGCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTG 23432854 Query 118 AATACATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAG 175 |||| | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || Sbjct 23432855 AATATTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAG 23432913 Query 176 GACC-GCCGTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGT 233 | | |||||||||||||| ||| ||||| | |||||| | ||||| Sbjct 23432914 ATCAAGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGGGAGGT 23432973 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 |||||||||||| |||||||||| |||||||| || |||| |||||||||| Sbjct 23432974 GAAATTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCA 23433033 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| ||||||||||||| || Sbjct 23433034 TTAATCA-AGAACGAAAGTTAGAGG 23433057 Score = 86.0 bits (94), Expect = 1e-14 Identities = 180/261 (69%), Gaps = 23/261 (9%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| || ||| ||||| Sbjct 23212001 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTAAAAGCAGGCTTTAAATGCCTGAATA 23212060 Query 122 -CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC- 178 | |||||| ||||| |||| ||| | | ||||| ||| ||| ||| || | Sbjct 23212061 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGCTTTTCAGATCA 23212119 Query 179 CGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||| ||||||| || | ||||| | |||||| | |||||||||| Sbjct 23212120 AGAGGTAATGGTTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAA 23212179 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||| |||||||||| ||| || ||||||||||||| Sbjct 23212180 TTCTTGGACCGTCGTAAGACTAACT------TAAGACTT--------ATGTTTTCATTAA 23212225 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 23212226 TCA-AGAACGAAAGTTAGAGG 23212245 >seq750 Length=2511 Score = 127 bits (140), Expect = 4e-27 Identities = 190/261 (73%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 1586 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 1645 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC 179 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || | Sbjct 1646 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCA 1704 Query 180 -GCCGTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||||||||| ||| ||||| | |||||| | ||||||||| Sbjct 1705 AGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGGGAGGTGAAA 1764 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||| |||||||||| |||||||| || |||| |||||||||||||| Sbjct 1765 TTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAA 1824 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 1825 TCA-AGAACGAAAGTTAGAGG 1844 >seq305 Length=13234 Score = 122 bits (134), Expect = 2e-25 Identities = 191/265 (72%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCG 117 ||| ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| | Sbjct 216 GGGGGCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTG 275 Query 118 AATACATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAG 175 |||| | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || Sbjct 276 AATATTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAG 334 Query 176 GACC-GCCGTAATGATTAATAGGGATAGTCGG-GGGTGTCAGTATTCAATTGTCAGAGGT 233 | | ||||| |||||||| ||| | ||| | |||||| | ||||| Sbjct 335 ATCAAGAGGTAATTATTAATAGAAGCAGTTTGAGGGCATTAGTATTACGACGCGGGAGGT 394 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 |||||||||||| |||||||||| |||||||| || |||| |||||||||| Sbjct 395 GAAATTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCA 454 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| ||||||||||||| || Sbjct 455 TTAATCA-AGAACGAAAGTTAGAGG 478 >seq941 Length=1134 Score = 114 bits (126), Expect = 2e-23 Identities = 177/243 (73%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 260 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 319 Query 122 -CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC- 178 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || | Sbjct 320 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCA 378 Query 179 CGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||||||||| || | ||||| | |||||| | |||||||||| Sbjct 379 AGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAA 438 Query 238 TTCTTGGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 |||||||| | | |||||||||| |||||||| || |||| ||||||||||||| Sbjct 439 TTCTTGGACCCGTCGTAAGACTAACTTAAGCGAAAGCATT-GCCAAAGATGTTTTCATTA 497 Query 297 ATC 299 ||| Sbjct 498 ATC 500 >seq94 Length=13940 Score = 77.0 bits (84), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 13422 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 13363 Query 122 -CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC- 178 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| ||| | Sbjct 13362 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTT-TAGATCA 13305 Query 179 CGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | ||||| |||||||| || | | ||| | |||||| | |||||||||| Sbjct 13304 AGAGGTAATTATTAATAGAAGCAGTTTGAGGGCATTAGTATTACGACGCGAGAGGTGAAA 13245 Query 238 TTCTTGGATTTATTGAAGACTAACT 262 |||||||| | |||||||||| Sbjct 13244 TTCTTGGACCGTCTTAAGACTAACT 13220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915182885760