Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1869 295 1e-77 seq217 295 1e-77 seq1 289 5e-76 seq335 271 1e-70 seq216 235 9e-60 seq778 150 3e-34 >seq1869 Length=76973 Score = 295 bits (326), Expect = 1e-77 Identities = 214/244 (88%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 38297 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 38238 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 38237 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 38179 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 38178 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 38119 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 38118 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 38060 Query 269 GGCC 272 |||| Sbjct 38059 GGCC 38056 Score = 295 bits (326), Expect = 1e-77 Identities = 214/244 (88%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 74481 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 74422 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 74421 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 74363 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 74362 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 74303 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 74302 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 74244 Query 269 GGCC 272 |||| Sbjct 74243 GGCC 74240 Score = 248 bits (274), Expect = 1e-63 Identities = 197/233 (85%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||||||| || ||||| ||||||||||||||||||| | |||||| Sbjct 4492 GGTAAAACTAACCTGTCTCACGAGGGTCTTAACCCAGCTCACGTTCCCTTGCA-TGGGTG 4550 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 ||||||||||||||| |||| |||||| || ||||||||||||||||||||||| Sbjct 4551 AACAATCCAACGCTTGGTAAATTTTGCTTCACAATATTAGGAAGAGCCGACATCGAAGGA 4610 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 4611 TCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCCATGGTAAC 4670 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 ||||| | ||||||| | | ||| || | | |||||||||||||||| Sbjct 4671 TTTTCAGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 4722 >seq217 Length=1963 Score = 295 bits (326), Expect = 1e-77 Identities = 214/244 (88%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1681 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 1622 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 1621 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 1563 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1562 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 1503 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 1502 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 1444 Query 269 GGCC 272 |||| Sbjct 1443 GGCC 1440 >seq1 Length=23542271 Score = 289 bits (320), Expect = 5e-76 Identities = 213/244 (87%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 23240532 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 23240473 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||||| |||||||||| ||||| |||||| |||||||||||||||| Sbjct 23240472 TGCA-TGGGTGAACATTCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 23240414 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 23240413 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 23240354 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 23240353 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 23240295 Query 269 GGCC 272 |||| Sbjct 23240294 GGCC 23240291 Score = 271 bits (300), Expect = 1e-70 Identities = 209/244 (86%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 23262215 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 23262274 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||||| |||||||||| ||||| | | |||||||||||||||| Sbjct 23262275 TGCA-TGGGTGAACATTCCAACGCTTGGTGAATTTTACA-----ATGATAGGAAGAGCCG 23262328 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 23262329 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 23262388 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 23262389 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 23262447 Query 269 GGCC 272 |||| Sbjct 23262448 GGCC 23262451 Score = 259 bits (286), Expect = 8e-67 Identities = 206/244 (84%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||||||||||||| |||||||| ||||||||||||| |||||||||||||| Sbjct 23472601 GTCATTAGTAGGGTAAAACTAATCTGTCTCACGACGGTCTAAACCTAGCTCACGTTCCCT 23472660 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||| |||||||||| ||||| |||| | |||||||||||||| Sbjct 23472661 ------GGGTGAACA-TCCAACGCTTGGTGAATTTTGCTCCACATGGATAGGAAGAGCCG 23472713 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 23472714 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 23472773 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 23472774 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 23472832 Query 269 GGCC 272 |||| Sbjct 23472833 GGCC 23472836 >seq335 Length=12187 Score = 271 bits (300), Expect = 1e-70 Identities = 209/244 (86%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 11139 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 11080 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||||| |||||||||| ||||| | | |||||||||||||||| Sbjct 11079 TGCA-TGGGTGAACATTCCAACGCTTGGTGAATTTTACA-----ATGATAGGAAGAGCCG 11026 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 11025 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 10966 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 10965 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 10907 Query 269 GGCC 272 |||| Sbjct 10906 GGCC 10903 >seq216 Length=1813 Score = 235 bits (260), Expect = 9e-60 Identities = 180/209 (86%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| Sbjct 1 GGTCTAAACCCAGCTCACGTTCCCTTGCA-TGGGTGAACAATCCAACGCTTGGTGAATTT 59 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 60 TGCTTCCCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAAC 119 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||| ||||||||||||||||||| |||||||||||||| ||||||| | | ||| Sbjct 120 GCTTGGCCACCACAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCTTG-TTAAAA 178 Query 245 TTTCGAGGGA-CTAAAGGATCGATAGGCC 272 || | | |||||||||||||||| Sbjct 179 ACTCTTTAAACCAAAAGGATCGATAGGCC 207 >seq778 Length=1047 Score = 150 bits (166), Expect = 3e-34 Identities = 105/118 (89%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 931 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 990 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 | ||||||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct 991 -TGCATGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGC 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854384022720