Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1869 163 5e-38 seq1198 163 5e-38 seq441 158 2e-36 seq1 158 2e-36 seq869 154 3e-35 seq161 141 2e-31 seq941 104 4e-20 seq750 100 5e-19 >seq1869 Length=76973 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 45088 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 45146 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 45147 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 45204 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 45205 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 45263 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 45264 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 45306 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 57569 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 57627 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 57628 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 57685 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 57686 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 57744 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 57745 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 57787 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 69272 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 69330 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 69331 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 69388 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 69389 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 69447 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 69448 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 69490 >seq1198 Length=1315 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 917 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 975 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 976 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 1033 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 1034 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 1092 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 1093 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 1135 >seq441 Length=4879 Score = 158 bits (174), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 545 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 603 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || || | ||| ||||| |||||| | | || | Sbjct 604 AATGAAAGTATCAACGTGT--ATTTACTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 661 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 662 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 720 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 721 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 763 >seq1 Length=23542271 Score = 158 bits (174), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 23212776 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 23212834 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || || |||||||| || || | ||| ||||| |||||| | | || | Sbjct 23212835 AAAGAAAGTATCAACGAGT--ATTTACTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 23212892 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 23212893 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 23212951 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 23212952 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 23212994 Score = 149 bits (164), Expect = 1e-33 Identities = 169/223 (76%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| ||| || ||||||||||||| Sbjct 23433588 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGAGCTGCACGCGCGCTAC 23433646 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || || | ||| ||||| |||||| | | || | Sbjct 23433647 AATGAAAGTATCAACGTGT--ATTTACTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 23433704 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| | ||| || |||||| Sbjct 23433705 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGAAATTCCCAGTAAG 23433763 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 23433764 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 23433806 Score = 132 bits (146), Expect = 9e-29 Identities = 157/215 (73%), Gaps = 16/215 (7%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| || Sbjct 23281368 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACAATGAAAG 23281309 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||||| || || || | ||| ||||| |||||| | | || | || || || Sbjct 23281308 TATCAACGTGT--ATTTACTAGTCCGAGAGGTCCGGGTAAACCGCTGAACCACTTTCATG 23281251 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | || | | ||| ||||| || |||||| | | ||| Sbjct 23281250 CTTGGGATTG--------------TGAACATGAACTTGGAATTCCCAGTAAGTGTGAGTC 23281205 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | ||| |||||||||||||||||||||||| Sbjct 23281204 ATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 23281170 >seq869 Length=2916 Score = 154 bits (170), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||| Sbjct 2892 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGTTAC 2834 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || || | ||| ||||| |||||| | | || | Sbjct 2833 AATGAAAGTATCAACGTGT--ATTTACTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 2776 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 2775 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 2717 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 2716 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 2674 >seq161 Length=1074 Score = 141 bits (156), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175 ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| || Sbjct 488 AATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACAATGAAAGTA 429 Query 176 CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCT 235 ||||| || || ||| | ||| ||||| |||||| | | || | || || |||| Sbjct 428 TCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCACTTTCATGCT 371 Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 ||||| | | | || || | || | | | ||| ||||| || |||||| | | ||||| Sbjct 370 TGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAGTGTGAGTCAT 312 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||| ||| |||||||||||||||||| Sbjct 311 TAACTCGCATTG---ACGTCCCTGCCCTTTGTA 282 >seq941 Length=1134 Score = 104 bits (114), Expect = 4e-20 Identities = 89/108 (82%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 1028 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 1086 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 | ||| || ||||| || || ||| | ||| ||||| |||||| Sbjct 1087 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAA 1132 >seq750 Length=2511 Score = 100 bits (110), Expect = 5e-19 Identities = 105/136 (77%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||| Sbjct 2374 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGTTAC 2432 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || || | ||| ||||| |||||| | | || | Sbjct 2433 AATGAAAGTATCAACGTGT--ATTTACTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 2490 Query 226 CTGTCGTGCTGGGGAT 241 || || |||| ||||| Sbjct 2491 CTTTCATGCTTGGGAT 2506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947182287360