Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq448 587 6e-163 seq449 412 3e-110 >seq448 Length=23513712 Score = 587 bits (650), Expect = 6e-163 Identities = 1255/1857 (68%), Gaps = 47/1857 (3%) Strand=Plus/Plus Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140 || |||||||| || ||||| ||||| | |||||| | ||||||||||| ||||| ||| Sbjct 10325250 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTG 10325309 Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200 || ||||| ||| | ||| ||||| || || | | ||| |||| || ||||||||| Sbjct 10325310 AGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGCC 10325369 Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCATGTC 65259 ||||| || || ||||||||||||||||| ||| |||| ||||||||| || ||||| | Sbjct 10325370 ACATGTATGTTGAACGACTGACTCTGATCTATG-AACGCACCACGATCGGCGGCCATTTT 10325428 Query 65260 AATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTG 65318 ||| | ||| | |||| || ||||| || ||||||||||| || |||| | Sbjct 10325429 AATCGTG-GACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCACCTTCGGGG 10325487 Query 65319 GAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACT 65378 | || |||||||| |||| || || | | | || || | || ||| | Sbjct 10325488 GTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGTTCTTCATGTCGT 10325547 Query 65379 CTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACT 65438 | |||||| ||| ||| | || | | | ||| ||| | |||| || ||||| | Sbjct 10325548 CGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATT 10325607 Query 65439 CGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGT 65498 |||||||||| || || ||| || ||||| | ||| ||| || ||||||||| | | Sbjct 10325608 CGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGAAGGATTCATTAT 10325667 Query 65499 TGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCA 65558 |||| | || || || |||||||| || ||||||||||| || | || ||||| || | Sbjct 10325668 TGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGA 10325727 Query 65559 ATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGA 65618 |||| ||| |||| | ||||| | ||||| ||||| |||| ||| | Sbjct 10325728 CACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACA--GGTT---CGTTGG 10325782 Query 65619 CATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAAC 65678 || || | |||||| || | ||||| |||| | || |||| || | | Sbjct 10325783 CA-CCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCTCGTAGG 10325841 Query 65679 TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAA 65738 | ||||| || || || ||| |||| ||||||| || | ||| || | |||| Sbjct 10325842 TTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAA 10325901 Query 65739 TGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCA 65798 | || ||||| || | |||| | || || || ||||| |||||||| | || || Sbjct 10325902 TCGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCA 10325961 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 | || | |||| || || | || |||| ||||| || | |||||| || | ||||| Sbjct 10325962 TGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAAT 10326021 Query 65859 TGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGC 65918 |||| || ||||| || | ||| || || |||||||| || || || | ||| Sbjct 10326022 TGGATTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTGTTTAGATTTT 10326081 Query 65919 GTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCG 65977 || || | | || | | | | || || ||||||| | || || Sbjct 10326082 TGGTAACTATCTTGGTGACTTCCTTGAGCTTCTT-GAAATCATACGTCTTC------TCC 10326134 Query 65978 GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATC 66037 || || |||||| || ||||||| || || | ||||||||| |||||| Sbjct 10326135 GGCGTT---------ACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATC 10326185 Query 66038 TCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCC 66097 || || || |||| || || || ||||| || |||| || ||||| || |||||| Sbjct 10326186 TCATCCGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCC 10326245 Query 66098 AAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCG 66157 | |||||| || || ||||| | ||||| || |||||| ||| |||||||||| | ||| Sbjct 10326246 ACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCG 10326305 Query 66158 GTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACC 66217 ||||| ||||| | |||||||||||| ||| || | | ||||| ||||| || Sbjct 10326306 GTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG 10326365 Query 66218 GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCG 66277 |||| ||| | | ||||| | ||||| || | |||||| || ||||| || ||| Sbjct 10326366 GCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCG 10326425 Query 66278 GACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGA 66337 |||| ||||||||||| || ||||| |||||||||||||| | || || |||| Sbjct 10326426 TGGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGT--TGGCCTCCACG- 10326482 Query 66338 CG---CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCC 66394 || ||| || ||||| |||||||| |||||||| || ||||||||||| || | ||| Sbjct 10326483 CGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCT 10326542 Query 66395 TCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTC 66453 || |||| ||| || || || || ||||||||||||| || | ||||| ||||| Sbjct 10326543 TCTTTGCCTGTG-TTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTC 10326601 Query 66454 CAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGAC 66513 |||||| ||||| || | || ||| |||||||| || || || || || || || || Sbjct 10326602 CAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCAC 10326661 Query 66514 ATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG----T 66569 ||| ||||| || | || ||| || || | ||| || || | ||||| |||||| | Sbjct 10326662 ATTATTGAAAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAAT 10326721 Query 66570 CGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCT 66629 ||||| | || ||| || || ||| || || || ||||| |||||||| | || Sbjct 10326722 CGATGTG----CCCTTTGCACGAATGCAGTGTACGTTAAGTCCAATGCCACCGGCGGACT 10326777 Query 66630 TCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689 | ||||| || || | |||| | | ||| ||||| || |||||||| | | | Sbjct 10326778 TGGAGATCATGGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCA 10326837 Query 66690 TGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGG 66749 ||||||| ||| | || || | || || | |||||| || | || || |||| Sbjct 10326838 TGGTCAGAAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGG 10326897 Query 66750 GTGTAGCGTGCGTAAAGTAATG--GCGAGACATGTAATTGTACGTCTCGATGACAGCATC 66807 | | || ||||| ||||| | ||| | | | ||| || || || | | | ||||| Sbjct 10326898 GCGATGCATGCGTGAAGTAGCGCTCCGATAGAAG--ATTATAAGTTTCCACGGCCGCATC 10326955 Query 66808 AATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGAC 66867 || | || ||||| || |||| || |||||||| | | || || || || | Sbjct 10326956 GATATCCTCTCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGC 10327015 Query 66868 CAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | | || | | | | ||||| || ||||||||||||| ||||| || Sbjct 10327016 GATCTTTCCGTTTCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATA 10327072 >seq449 Length=25286936 Score = 412 bits (456), Expect = 3e-110 Identities = 579/810 (71%), Gaps = 7/810 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || ||||| |||||||| || |||||||| ||||||||||| ||| | | ||| | Sbjct 11984312 AGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGATT 11984253 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 || | || | | || || | |||||||| || ||| | || ||||| |||| Sbjct 11984252 GGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTTGCCTTCTTCGCCG 11984193 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || ||||| ||||| || ||||| | |||| || ||| ||||||||||| | Sbjct 11984192 CCTCCGACGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCA 11984133 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 ||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 11984132 CGGAGGCACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 11984073 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||||||| | ||||| || |||||| | || | | || || |||| || | Sbjct 11984072 ACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACCTGTTTAACG 11984013 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | ||||| ||||| ||||| |||||||| || || || |||||| | |||||| || Sbjct 11984012 CTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCCT 11983953 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | |||| | || || ||||| | | || ||||| | || ||||| | || | Sbjct 11983952 CCAAATCGGCCAACTTCGGGGAACGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCT 11983893 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 |||| || || || | || || ||| | ||||| || || || ||||| || ||| Sbjct 11983892 TCAGCGGCAGCTTCGCTTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGA 11983833 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| ||| ||| | || || |||||||||||| |||| || || ||||| || || Sbjct 11983832 CCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGA 11983773 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | ||| ||| | |||||| | || || | ||||| | ||||| | || | Sbjct 11983772 TGTTCCAAC---ACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCG 11983716 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | ||||| | || || ||||| || || || || || |||||||| | || |||| Sbjct 11983715 ACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCCTGCCCGTCAATTTGATTGGCA 11983656 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825 ||||||| | || ||||| ||||| ||||| || || || |||||| || | || || | Sbjct 11983655 TGAATTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGAGT 11983596 Query 61826 TGG--GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTC 61883 ||| || ||| |||||| || || |||||||| ||| | |||||||| ||||| || Sbjct 11983595 TGGGCGTTGGAA--AGATCTACAACACCAAAAACCCCTTTAACTTCATGGAGATGATATC 11983538 Query 61884 GCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||||||| ||||| || ||||| ||||| Sbjct 11983537 GCTGGATGGAAAGACCAACTTTTTTGAGAA 11983508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558939176800