Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq448 96.9 1e-14 >seq448 Length=23513712 Score = 96.9 bits (106), Expect = 1e-14 Identities = 183/269 (68%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 21633 ACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTTTTGC 21692 || || ||||| || ||||| |||||||||||| ||| || | || | | || | Sbjct 11011916 ACTCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCCACCATC 11011857 Query 21693 GCCTGCTGCAAAACTGGGGTCGA-GATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCC 21751 || | ||| || | || ||| || || |||| ||||||||||| ||||| Sbjct 11011856 ACCAGTTGC-------GGATAGAAGATACGCTCGCAAATGAACTGGGCGATGCGGTCGCC 11011804 Query 21752 ATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCT 21811 |||||| | || || || || ||||| ||||| || || || |||| ||||| | Sbjct 11011803 ATGCTTCACCTCGAAATCAACATCTGAGTGATTGAACAGGACGACGCCGAGATTGCCGCG 11011744 Query 21812 ATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGA 21871 |||| ||| || || |||||||| || || | |||||||| ||||| || || Sbjct 11011743 ATAATCCTCGTCCACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCCAGCCCGGA 11011684 Query 21872 TCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900 || || || ||||| |||||| ||||| Sbjct 11011683 TCGTGGGGCTACGCGTCCGTAGGAGCCCT 11011655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084688032682260