Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 392 3e-104 seq5 271 6e-68 >seq4 Length=20862834 Score = 392 bits (434), Expect = 3e-104 Identities = 590/838 (70%), Gaps = 3/838 (0%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 ||||||| || ||||||||||| ||||| ||||| ||| | || || ||| || |||| Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| ||| | | | || | | || || |||||| | || ||||| || | Sbjct 15863213 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTG 15863154 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | |||||||| || || || |||||| | | || || || ||||||||||| | Sbjct 15863153 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 15863094 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 ||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 15863093 CGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 15863034 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || ||||| || || ||||| |||||| | ||| || || |||||||||| Sbjct 15863033 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 15862974 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | || ||||| || ||||| || ||||| || ||||| |||||| | ||||| || Sbjct 15862973 CTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCCT 15862914 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | |||| | |||| || || | | || ||||||| || || || | || | Sbjct 15862913 CGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCT 15862854 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | || || |||||| | ||||||||| ||||||| ||||| || ||||||||||||| Sbjct 15862853 TTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGA 15862794 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| ||| ||| |||| || || ||||| || | || || || ||||| | ||| Sbjct 15862793 CCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGG---TGC 15862737 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | | | | | |||| ||| | || || | |||||| | ||||| | | | Sbjct 15862736 TCATGTATCACCATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGG 15862677 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | || || ||||| ||||| || || ||||| || |||||||| | || |||| Sbjct 15862676 ATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCA 15862617 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825 |||| |||| || ||||| ||||| || || || || ||||| || ||| | | || Sbjct 15862616 TGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGC 15862557 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 | ||| || |||||| || || || || || || |||||||||| ||||| |||| Sbjct 15862556 TCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGC 15862497 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 |||| || ||||| || || || ||||| || | ||| || || || ||||||| Sbjct 15862496 TGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAGCGCATGGGTGT 15862439 >seq5 Length=28826359 Score = 271 bits (300), Expect = 6e-68 Identities = 1150/1797 (64%), Gaps = 42/1797 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| || || || || || || || || | || || | | ||||||||| ||||| Sbjct 15308258 TCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || ||||| ||| | | ||||| || |||| |||||| | || || ||||| Sbjct 15308198 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCT 15308139 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || || || | ||| ||||||||||| ||||| || | ||| | ||| |||||||| Sbjct 15308138 GCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATT 15308079 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | ||| | | | || || ||||| || || || || || || |||| Sbjct 15308078 TTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGG 15308019 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGAC 65377 ||||| ||||| || || | || || | | | ||| || ||| |||| Sbjct 15308018 GGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCA 15307959 Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437 || ||| || |||| || | | || | || ||| |||||| ||||| || Sbjct 15307958 TCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACTTGAAAT 15307899 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 || || || | ||| || | ||| || || | || ||||| || ||||| | Sbjct 15307898 TCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGTTA 15307839 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGC 65557 || || | |||||| ||||||||||| || ||||| || || || ||||| || || | Sbjct 15307838 TTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCCTA 15307779 Query 65558 AATCCGTTCATTTCAATGT----TGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 | ||||| | ||| ||||| | | | || || | ||| | ||| | |||| | Sbjct 15307778 ATTCCGTGCTTTTTAATGTCTTCTTTCAGGC--TTTG--CCAATCCCATA--GGTTCGTT 15307725 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | || | | ||||||||| | ||| || |||| | || | || || Sbjct 15307724 G--GAGTTTTATC--CCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTC 15307669 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | | || || || | |||| ||||||| ||| || | || || || ||| Sbjct 15307668 ATAGGTTTCATATGGACCAAA-TGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAA 15307610 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 ||||||| || || || || || | || | || || || ||||| || || || | Sbjct 15307609 AATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAA 15307550 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 || ||| | | |||| ||| || |||||||||| || |||||||| |||||||| | Sbjct 15307549 AACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCC 15307490 Query 65853 GCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 |||||||| | ||| | || | || | |||||| || ||||| || ||||| || Sbjct 15307489 TTAAATTGGA-CTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTA 15307431 Query 65912 AAATTGCGTGTCACCACATGCACGATACGTCGC--AATTGTTCGAAATCAAAATGTTTAG 65969 | ||| || || || | | ||| || |||| || ||||||| | ||| Sbjct 15307430 AGATTTT-TGGCAACAGTTTTG-GTTACTTCTTTTAATTTTTTGAAATCATACGTTTTT- 15307374 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 || | || || ||| || || || | || || | ||||||| Sbjct 15307373 -----TCTGCTGTTACGAACA---------TGTTCAGTGCTATTGAAGCTAAATTGCAGA 15307328 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 |||| ||||| ||||| || | |||||||||||||| || || | ||||||||| | Sbjct 15307327 CAGCGATCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAA 15307268 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 | ||||| | ||| |||||||| ||||| | |||||| | |||||| | | |||||| | Sbjct 15307267 TAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATG 15307208 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 | | || || || ||||| || || || ||||| ||| | ||| | || | ||| | Sbjct 15307207 GGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTG 15307148 Query 66210 TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC 66269 | || ||| | |||| | || || | | ||||| | ||| || ||| |||| Sbjct 15307147 TTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCC 15307088 Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329 | || || || | ||||| || ||||||||||||| ||||| ||| | Sbjct 15307087 AAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCT 15307028 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 | ||||| ||| || |||||||| ||||| | ||||| || ||||| |||||||| | Sbjct 15307027 CAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGT 15306968 Query 66390 GCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 || || | || ||| || || | | ||| | |||||||| | || | |||||| Sbjct 15306967 TTTCTTCTTTTCCAGTGTTTCTTTTG-AGGTCTAAAAACTCAAAAACATCTGAATGCCAG 15306909 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 || || | || || || || | || | ||| || || || || || || || ||| Sbjct 15306908 GGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGA 15306849 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 || ||||| || || || | ||||| || || | || || || | || || || || Sbjct 15306848 GCCACATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCA 15306789 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 || | | ||| || || || |||||||| || || || ||||| || | Sbjct 15306788 CATATTGAAGTGCCTTTAGCACGAATGCAATGAACATT-AGTCCGATTCCACCTGCTGAT 15306730 Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688 || || || ||||| | | |||| || || || ||||| || || || Sbjct 15306729 TTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTC 15306670 Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 || |||| || | || || | ||| ||| ||| || || | || || || Sbjct 15306669 ATTGTCAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTT 15306610 Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA-ATTGTACGTCTCGATGACAGCATC 66807 || | || ||||||||||| | ||||| ||| ||||| || || | | ||||| Sbjct 15306609 GGCGAGGCATGCGTAAAGTATCGTTCAGACA-GTAGGTTGTAAGTTTCCACTGCCGCATC 15306551 Query 66808 AATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC 66864 ||| | || |||||||| || || || |||||||| | || ||| || ||||| Sbjct 15306550 AATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTC 15306494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567970927840