Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 392 3e-104
seq5 271 6e-68
>seq4
Length=20862834
Score = 392 bits (434), Expect = 3e-104
Identities = 590/838 (70%), Gaps = 3/838 (0%)
Strand=Plus/Minus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
||||||| || ||||||||||| ||||| ||||| ||| | || || ||| || ||||
Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
||| ||| | | | || | | || || |||||| | || ||||| || |
Sbjct 15863213 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTG 15863154
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| |||||||| || || || |||||| | | || || || ||||||||||| |
Sbjct 15863153 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 15863094
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 15863093 CGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 15863034
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|||| || ||||| || || ||||| |||||| | ||| || || ||||||||||
Sbjct 15863033 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 15862974
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
| || ||||| || ||||| || ||||| || ||||| |||||| | ||||| ||
Sbjct 15862973 CTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCCT 15862914
Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525
| | |||| | |||| || || | | || ||||||| || || || | || |
Sbjct 15862913 CGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCT 15862854
Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585
| || || |||||| | ||||||||| ||||||| ||||| || |||||||||||||
Sbjct 15862853 TTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGA 15862794
Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645
||||| ||| ||| |||| || || ||||| || | || || || ||||| | |||
Sbjct 15862793 CCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGG---TGC 15862737
Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705
| | | | | |||| ||| | || || | |||||| | ||||| | | |
Sbjct 15862736 TCATGTATCACCATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGG 15862677
Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765
| || || ||||| ||||| || || ||||| || |||||||| | || ||||
Sbjct 15862676 ATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCA 15862617
Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825
|||| |||| || ||||| ||||| || || || || ||||| || ||| | | ||
Sbjct 15862616 TGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGC 15862557
Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885
| ||| || |||||| || || || || || || |||||||||| ||||| ||||
Sbjct 15862556 TCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGC 15862497
Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943
|||| || ||||| || || || ||||| || | ||| || || || |||||||
Sbjct 15862496 TGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAGCGCATGGGTGT 15862439
>seq5
Length=28826359
Score = 271 bits (300), Expect = 6e-68
Identities = 1150/1797 (64%), Gaps = 42/1797 (2%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| || || || || || || || || | || || | | ||||||||| |||||
Sbjct 15308258 TCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || ||||| ||| | | ||||| || |||| |||||| | || || |||||
Sbjct 15308198 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCT 15308139
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| || || | ||| ||||||||||| ||||| || | ||| | ||| ||||||||
Sbjct 15308138 GCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATT 15308079
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317
| ||| | | | || || ||||| || || || || || || ||||
Sbjct 15308078 TTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGG 15308019
Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGAC 65377
||||| ||||| || || | || || | | | ||| || ||| ||||
Sbjct 15308018 GGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCA 15307959
Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437
|| ||| || |||| || | | || | || ||| |||||| ||||| ||
Sbjct 15307958 TCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACTTGAAAT 15307899
Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497
|| || || | ||| || | ||| || || | || ||||| || ||||| |
Sbjct 15307898 TCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGTTA 15307839
Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGC 65557
|| || | |||||| ||||||||||| || ||||| || || || ||||| || || |
Sbjct 15307838 TTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCCTA 15307779
Query 65558 AATCCGTTCATTTCAATGT----TGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613
| ||||| | ||| ||||| | | | || || | ||| | ||| | |||| |
Sbjct 15307778 ATTCCGTGCTTTTTAATGTCTTCTTTCAGGC--TTTG--CCAATCCCATA--GGTTCGTT 15307725
Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673
| || | | ||||||||| | ||| || |||| | || | || ||
Sbjct 15307724 G--GAGTTTTATC--CCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTC 15307669
Query 65674 GAAACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732
| | || || || | |||| ||||||| ||| || | || || || |||
Sbjct 15307668 ATAGGTTTCATATGGACCAAA-TGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAA 15307610
Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792
||||||| || || || || || | || | || || || ||||| || || || |
Sbjct 15307609 AATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAA 15307550
Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852
|| ||| | | |||| ||| || |||||||||| || |||||||| |||||||| |
Sbjct 15307549 AACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCC 15307490
Query 65853 GCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911
|||||||| | ||| | || | || | |||||| || ||||| || ||||| ||
Sbjct 15307489 TTAAATTGGA-CTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTA 15307431
Query 65912 AAATTGCGTGTCACCACATGCACGATACGTCGC--AATTGTTCGAAATCAAAATGTTTAG 65969
| ||| || || || | | ||| || |||| || ||||||| | |||
Sbjct 15307430 AGATTTT-TGGCAACAGTTTTG-GTTACTTCTTTTAATTTTTTGAAATCATACGTTTTT- 15307374
Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029
|| | || || ||| || || || | || || | |||||||
Sbjct 15307373 -----TCTGCTGTTACGAACA---------TGTTCAGTGCTATTGAAGCTAAATTGCAGA 15307328
Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089
|||| ||||| ||||| || | |||||||||||||| || || | ||||||||| |
Sbjct 15307327 CAGCGATCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAA 15307268
Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149
| ||||| | ||| |||||||| ||||| | |||||| | |||||| | | |||||| |
Sbjct 15307267 TAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATG 15307208
Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209
| | || || || ||||| || || || ||||| ||| | ||| | || | ||| |
Sbjct 15307207 GGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTG 15307148
Query 66210 TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC 66269
| || ||| | |||| | || || | | ||||| | ||| || ||| ||||
Sbjct 15307147 TTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCC 15307088
Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329
| || || || | ||||| || ||||||||||||| ||||| ||| |
Sbjct 15307087 AAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCT 15307028
Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389
| ||||| ||| || |||||||| ||||| | ||||| || ||||| |||||||| |
Sbjct 15307027 CAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGT 15306968
Query 66390 GCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448
|| || | || ||| || || | | ||| | |||||||| | || | ||||||
Sbjct 15306967 TTTCTTCTTTTCCAGTGTTTCTTTTG-AGGTCTAAAAACTCAAAAACATCTGAATGCCAG 15306909
Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508
|| || | || || || || | || | ||| || || || || || || || |||
Sbjct 15306908 GGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGA 15306849
Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568
|| ||||| || || || | ||||| || || | || || || | || || || ||
Sbjct 15306848 GCCACATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCA 15306789
Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628
|| | | ||| || || || |||||||| || || || ||||| || |
Sbjct 15306788 CATATTGAAGTGCCTTTAGCACGAATGCAATGAACATT-AGTCCGATTCCACCTGCTGAT 15306730
Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688
|| || || ||||| | | |||| || || || ||||| || || ||
Sbjct 15306729 TTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTC 15306670
Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748
|| |||| || | || || | ||| ||| ||| || || | || || ||
Sbjct 15306669 ATTGTCAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTT 15306610
Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA-ATTGTACGTCTCGATGACAGCATC 66807
|| | || ||||||||||| | ||||| ||| ||||| || || | | |||||
Sbjct 15306609 GGCGAGGCATGCGTAAAGTATCGTTCAGACA-GTAGGTTGTAAGTTTCCACTGCCGCATC 15306551
Query 66808 AATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC 66864
||| | || |||||||| || || || |||||||| | || ||| || |||||
Sbjct 15306550 AATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTC 15306494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567970927840
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