Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 2e-13 seq5 87.8 7e-12 >seq1 Length=22123056 Score = 93.3 bits (102), Expect = 2e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349075 GTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGC 349134 || || ||||||||||||||| |||| |||||| ||||||||||| | | || || || Sbjct 17690054 GTTGATAATCTCCTTGAGTCTAGGCACGCCCAGTGTCACGTTCTTCGAGGACACACCAGC 17689995 Query 349135 AAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAG 349194 || ||||| || | ||| |||| ||| ||| || ||||| | | |||| | || | Sbjct 17689994 GAAATGGAACGTGTTGAGTGTCATCTGGGTGGCCGGTTCGCCCAAACTCTGGGCGGCCAA 17689935 Query 349195 GATGCCTACCATCTCGCCGGG 349215 | ||| ||||||||||| || Sbjct 17689934 GGCGCCAACCATCTCGCCAGG 17689914 Score = 86.0 bits (94), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| || || || ||||| ||||||||| ||| || |||| || | || | Sbjct 17688075 TCTCGTCGCCATCGAAATCGGCATTGTAGGGCGATGTGCAGGAGAGGTTCATTCGGAACG 17688016 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 || | | ||| | ||| ||| || ||| |||| || | |||||||||||| Sbjct 17688015 TGGACCA----GGGCAGAACCTTCACACGATGCCCCATCATACTCATCTTGTGGAGCGTG 17687960 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 |||||||||||| ||| | | ||| | ||||||| |||||||||||||||| |||| Sbjct 17687959 GGCTGGCGATTGAAGATCACAAGATCGTCGTCGCGCAGATGCCTCTCCACCTTGTAGCCG 17687900 >seq5 Length=28826359 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || |||| || || || ||||| ||| ||| | || |||||| | Sbjct 22257188 AGATGCGCTCGCAAATGAACTGAGCAATCCGATCTCCAACCTTCACCTCGAAGTCCGTAT 22257247 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 |||||||||||||||| || || || | ||||| | || ||| || || |||| Sbjct 22257248 CAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGG 22257307 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGT 21894 |||| || || | |||||||| |||||| || || | ||||||||||| || ||| Sbjct 22257308 CGCCCACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGG 22257367 Query 21895 GGCCCT 21900 ||||| Sbjct 22257368 AGCCCT 22257373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084739035826788