Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6828 125 3e-26 seq2331 125 3e-26 seq6624 120 1e-24 seq3582 120 1e-24 >seq6828 Length=421677 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 166552 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 166493 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 166492 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 166433 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 166432 TAGGGGCGA 166424 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 198801 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 198742 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 198741 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 198682 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 198681 TAGGGGCGA 198673 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 167249 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 167190 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 167189 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 167130 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 167129 AGAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 167096 Score = 120 bits (132), Expect = 1e-24 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 199497 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 199438 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 199437 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 199378 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||||||| || |||||||| || Sbjct 199377 AGAGAGTTAAATAGTACGTGAAACTG 199352 >seq2331 Length=1341 Score = 125 bits (138), Expect = 3e-26 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 573 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 514 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 513 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAT 454 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 453 AGAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 420 >seq6624 Length=38501 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 37428 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 37369 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 37368 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 37309 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 37308 AGAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 37275 >seq3582 Length=1735 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 633 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 574 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 573 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 514 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 513 AGAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079853260550