Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6828 255 1e-65 seq6729 188 1e-45 seq2487 80.6 5e-13 >seq6828 Length=421677 Score = 255 bits (282), Expect = 1e-65 Identities = 206/245 (84%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACC-TGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||||| |||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct 4974 GTCATTAGTAGGGTAAAACTAACCCTGTCTCACGACAGTCTAAACCCAACTCACGTTCCC 5033 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 | | |||||||||||||| ||||| ||||| |||||| |||||||||||||| Sbjct 5034 TTTGCATGGGTGAACAATCCCTCGCTTGGTGAATTTTGCTTCACACTGATAGGAAGAGCC 5093 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 5094 TACATCCAACGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTAT 5153 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGAT 267 |||| |||||||||||||| ||||||| | | ||| || | | ||||||||||| Sbjct 5154 CCCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGAT 5212 Query 268 AGGCC 272 ||||| Sbjct 5213 AGGCC 5217 Score = 241 bits (266), Expect = 2e-61 Identities = 202/244 (83%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| | |||||||||||| |||||||||| |||||||||||||||||||||| ||||| Sbjct 179885 GTCATTAATAGGGTAAAACTCACCTGTCTCAAGACGGTCTAAACCCAGCTCACGCTCCCT 179944 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||| |||| ||||||||||| |||| || |||| |||||||||||| ||| Sbjct 179945 -TGCCTGGACGAACTATCCAACGCTTGGGAAATTTTGTTTCGCAATGATAGGAAGATCCG 180003 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| || ||||||||||| |||||||||| ||||||||| ||||||||||||||||| Sbjct 180004 ACATCAAAAGATCAAAAAGCGACGTCGCTATATACGCTTGGCCGCCACAAGCCAGTTATC 180063 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 180064 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 180122 Query 269 GGCC 272 |||| Sbjct 180123 GGCC 180126 >seq6729 Length=51004 Score = 188 bits (208), Expect = 1e-45 Identities = 192/244 (79%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct 4657 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTACTTTAA-CTCACGTTCCCT 4715 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| ||||||||||||||||| Sbjct 4716 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCT-TATGATAGGAAGAGCCG 4773 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 || ||||| ||||||||| | || || |||||||| |||| | || || |||| || | Sbjct 4774 ACTTCGAAAGATCAAAAACCGACTTCTCTATGAACACTTGACCCCCTCATTCCAGATAGC 4833 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| ||||| |||||| ||||||| ||||| || | | |||| ||||||| Sbjct 4834 CCTACGGTAAGATTTCTGAACCCTCTAG-TTCAAAACTCTTTAAACCAAAAGAATCGATA 4892 Query 269 GGCC 272 |||| Sbjct 4893 GGCC 4896 >seq2487 Length=1372 Score = 80.6 bits (88), Expect = 5e-13 Identities = 102/138 (74%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 ||| |||| | || ||||| || ||||| | | | || || |||||||| |||||| ||| Sbjct 1370 GATTGGAATATCCAACATCAAACGATCATATACCGACTTCTCTATGAACACTTGGCCGCC 1311 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA- 254 ||| ||||| || |||||||||||||| ||||||| | | ||| || | Sbjct 1310 TTTGCCCATTTATCACTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAAC 1252 Query 255 CTAAAGGATCGATAGGCC 272 | |||||||||||||||| Sbjct 1251 CAAAAGGATCGATAGGCC 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854341550496