Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6828 197 5e-48 seq2487 197 5e-48 seq1972 197 5e-48 seq192 197 5e-48 seq6840 150 6e-34 seq6644 131 5e-28 seq6706 127 7e-27 seq1470 86.0 2e-14 seq6729 80.6 9e-13 >seq6828 Length=421677 Score = 197 bits (218), Expect = 5e-48 Identities = 172/215 (80%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 5577 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAT 5636 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 5637 CAAACCGAAGCCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 5696 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 5697 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 5756 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 5757 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 5791 Score = 197 bits (218), Expect = 5e-48 Identities = 172/215 (80%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 159146 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAT 159205 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 159206 CAAACCGAAGCCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 159265 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 159266 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 159325 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 159326 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 159360 Score = 197 bits (218), Expect = 5e-48 Identities = 172/215 (80%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 180486 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAT 180545 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 180546 CAAACCGAAGCCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 180605 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 180606 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 180665 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 180666 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 180700 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 5272 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 5331 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 5332 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 5378 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 158841 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 158900 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 158901 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 158947 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 180181 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 180240 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 180241 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 180287 >seq2487 Length=1372 Score = 197 bits (218), Expect = 5e-48 Identities = 172/215 (80%), Gaps = 13/215 (6%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 874 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAT 815 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 814 CAAACCGAAGCCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 755 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 754 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 695 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 694 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 660 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 1179 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 1120 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 1119 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 1073 >seq1972 Length=1270 Score = 197 bits (218), Expect = 5e-48 Identities = 172/215 (80%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 418 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAT 477 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 478 CAAACCGAAGCCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 537 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 538 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 597 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 598 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 632 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 113 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 172 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 173 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 219 >seq192 Length=814 Score = 197 bits (218), Expect = 5e-48 Identities = 172/215 (80%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 317 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAT 376 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 377 CAAACCGAAGCCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 436 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 437 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 496 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 497 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 531 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 12 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 71 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 72 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 118 >seq6840 Length=32352404 Score = 150 bits (166), Expect = 6e-34 Identities = 103/116 (89%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 ||| ||| | | || ||||||||||||||| ||||||||||||||||||| ||| || Sbjct 2350292 TTTTACACTGCCAGATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCC 2350233 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2350232 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGAAATC 2350177 >seq6644 Length=40933 Score = 131 bits (144), Expect = 5e-28 Identities = 74/75 (99%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2948 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 3007 Query 419 GAGGCATTTGGCTAC 433 ||||||||||||||| Sbjct 3008 GAGGCATTTGGCTAC 3022 >seq6706 Length=47015 Score = 127 bits (140), Expect = 7e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 8668 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 8609 Query 419 GAGGCATTTGGCTAC 433 || |||||||||||| Sbjct 8608 GACGCATTTGGCTAC 8594 Score = 105 bits (116), Expect = 2e-20 Identities = 78/90 (87%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 444 TCATAGTTACTCCCGCCGTNNNNCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 6311 TCATAGTTACTCTG--CGTGA--CCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGA 6256 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| |||||| Sbjct 6255 GCACTGGGCAGAAATCACATTGTATCAACA 6226 Score = 84.2 bits (92), Expect = 7e-14 Identities = 55/58 (95%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| Sbjct 3311 AGTAGATAGGGACAGTAGGAATCTCG-TAATCCA-TCATGCGCGTCACTAATTAGATG 3256 >seq1470 Length=1181 Score = 86.0 bits (94), Expect = 2e-14 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||| || || ||||||||||||||| | |||| || || | || ||| | Sbjct 253 GCCCGTTCCCATGAGTGGGGTTTCGCTAGATAGAAAATAGAGAGAGGATCATTCACGTGA 194 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 ||||||| ||||| |||||| || | || ||| |||||| || ||||||| | || | Sbjct 193 ATCCATTGTTGCGCCTCACTATGTAAAAGATTAGGAATTTGGTTATCTTAAGACAATCCT 134 Query 448 AGTTACTCCCGCCGT 462 | | |||| |||| Sbjct 133 AACAATTCCCTCCGT 119 >seq6729 Length=51004 Score = 80.6 bits (88), Expect = 9e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| | |||| Sbjct 4951 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCTTTATT 5010 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| |||| |||| ||||| ||||||| Sbjct 5011 ATTTGAGAGATGTACCGCCCCAGTCAAATTCCCTACCTGGCAATGTC 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635088135968