Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6839 511 4e-140 seq6840 360 2e-94 >seq6839 Length=26866924 Score = 511 bits (566), Expect = 4e-140 Identities = 621/840 (74%), Gaps = 7/840 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || |||||||| ||||||||||| ||| | || || ||| ||| |||| Sbjct 3410249 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCTAAGGACTTGACCGACT 3410190 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| |||||| | || | || || || |||||| | || |||||||||| Sbjct 3410189 GGGCACGTTTAACTGATAACGAGCGCCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3410130 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 |||| || || || || ||||||||| | | || || ||| |||||||||||| | Sbjct 3410129 CTTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3410070 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | || || ||||||||||| ||||| || || |||||||||||||| ||||||||||||| Sbjct 3410069 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3410010 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || || |||||||| || || ||||| | |||||| || ||||||||| Sbjct 3410009 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3409950 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 || | || || || || || || ||||| || || |||||||| || |||||| | Sbjct 3409949 CCGTTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3409890 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | || | ||||| || || | | || || || | || ||||| | || | Sbjct 3409889 CGAAGGCCGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3409830 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | ||||| |||||| | ||||||||| ||||||||||||| || ||||||||||||| Sbjct 3409829 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3409770 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| || Sbjct 3409769 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTGATGA 3409710 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG-GAGCGTGTGGGTGAGATTGT-TCG 61703 | ||| || || ||||| | ||||| | | | ||||| | |||||| | ||| Sbjct 3409709 TGTTC---CGGCATTTGGTGCAACGTCC-TAGCCGTGAGCGCATCATTGAGATCATCTCG 3409654 Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 || || || || || || || || ||||| || || ||| |||||||| | || || Sbjct 3409653 -GATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAACTTGATTGG 3409595 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||||||||||| | | ||||| |||||||||||||||||||| || ||||||||||| || Sbjct 3409594 CATGAATTGTGCATTGATGTCCCAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGA 3409535 Query 61824 TTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTC 61883 | ||| | ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 3409534 ACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTC 3409475 Query 61884 GCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 ||||||||||||||| || || ||||||||| || ||||| ||||||||| |||| || Sbjct 3409474 GCTGGATGGCAAGACTAACTTCTTCGAGAAAAAAGTTGGCGAATATCAACGTATGGGCGT 3409415 >seq6840 Length=32352404 Score = 360 bits (398), Expect = 2e-94 Identities = 1140/1757 (65%), Gaps = 39/1757 (2%) Strand=Plus/Minus Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140 || ||||| || || |||||||| || | || || | |||||| |||||||||||||| Sbjct 31473141 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 31473082 Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200 || || || ||| | ||| ||||| || |||| ||||||| ||||||| || || || Sbjct 31473081 AGACCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCT 31473022 Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCATGTC 65259 ||||| ||||| || |||||||| ||||| || |||| || | ||| || ||||| | Sbjct 31473021 ACATGAATATTGAAAGACTGACTTTGATCAAT-AAACGCTCCTCTATCAGCCGCCATTTT 31472963 Query 65260 AATGATACGACGT-CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTG 65318 || | || | | || || ||||| || || || |||| ||| | || | | Sbjct 31472962 TAT-AGTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 31472904 Query 65319 GAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACT 65378 |||| ||||| | || | ||||||||||| || || || |||| |||| | Sbjct 31472903 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 31472844 Query 65379 CTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACT 65438 | ||||||| | | || | | || | | ||||| | || | ||||| |||| Sbjct 31472843 CATCCCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACT 31472784 Query 65439 CGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGT 65498 |||| |||| ||| || | || ||||| || || || || || || ||| | | Sbjct 31472783 CGCCAGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTAT 31472724 Query 65499 TGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCA 65558 |||| | ||||| || |||||||| || ||||||||||||| | || || |||| | Sbjct 31472723 TGCCCAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGA 31472664 Query 65559 ATCCGT----TCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 |||| | | || || | | ||| ||||| ||| | | | | | | Sbjct 31472663 CACCGTGTTGCGCTATAGATTTTTTAAGAGCATT----CCAGTCCCAAA--GATCTGTTG 31472610 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 || | | ||||||||| | |||| |||| | || | || || | | Sbjct 31472609 GTGATTT----GTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACG 31472554 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 || | || || ||| || || || | || ||| |||| || | || || | Sbjct 31472553 TAAGTCTCATATGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAG 31472494 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || || || |||||||| | |||| | | | ||| ||| || ||||| || ||| Sbjct 31472493 TATATAGTTTCGAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTA-GGAATA 31472435 Query 65795 CC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 || ||| | | || | ||| || | ||||| ||||||||||| || ||||| ||||| Sbjct 31472434 CCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACG 31472375 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 ||||| || | | || || || | |||||||||||| ||||| || || ||| || Sbjct 31472374 TAAATTAGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAA 31472315 Query 65914 ATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGA 65971 || || || || | ||| || | | || || ||| || ||| Sbjct 31472314 GTTTTTCGTAAC--GATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTT---- 31472261 Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 || | || ||||||| | ||| || | || || | || || ||| Sbjct 31472260 --CTCCTGCGT---------CACAAACATATTAAGTGCGATTGACGCCAAATTACACACA 31472212 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 ||||| || || || || | ||| || || ||||| ||||||||||||||||| ||| Sbjct 31472211 GCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATTTTATA 31472152 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 || || | ||| ||||| || || || | || || | ||||| | | |||||| ||| Sbjct 31472151 GTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGA 31472092 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211 || || ||||| ||||| || || |||||||| |||||||| | || || | Sbjct 31472091 GTACCAGTCTCTACTTGAGATTCGATGATGGCAAACCAAAGAGATTGAGCTTTAATAACT 31472032 Query 66212 CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 || ||| | || | ||||| || | ||||||| ||| || ||||||||| Sbjct 31472031 CGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAA 31471972 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || || | || | || || || ||||||||||||| ||||| || ||| ||| Sbjct 31471971 ACATCTGGGAGGCCAGGGCATTTATGTGGACACATCAATGACCAGTCTTCATTAGCTTCA 31471912 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 ||||| |||||| |||||||||||||| | || | |||||||||||||| || || Sbjct 31471911 ACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAGAGATCGCGTGCACGATGT 31471852 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 ||||| | || |||||| | ||| | || || |||| || | ||||| || Sbjct 31471851 TCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGC 31471792 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 ||||| || || || || | || | ||| || || || || || || ||||| ||| Sbjct 31471791 TCCAGATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACATAGCGCGCG 31471732 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 ||||| || || || | ||||| ||||| | || || || |||| || || || Sbjct 31471731 ACATTATTAAATACTCTTAACATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCACAA 31471672 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 || | || ||| || || ||| ||||||||| || ||||| ||||| |||| ||| Sbjct 31471671 ATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATTCCACCTGCCGACTTT 31471612 Query 66632 GAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATG 66691 || || || || | | |||| || || || ||||| || ||| | || Sbjct 31471611 GATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATA 31471552 Query 66692 GTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGT 66751 || | || | |||||| | ||| || |||||| || | || || || ||| Sbjct 31471551 GTTAAAAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGT 31471492 Query 66752 GTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATG 66811 | || || ||||| || | ||| | ||||||| || || | ||| |||||| Sbjct 31471491 GATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATA 31471432 Query 66812 TTTTCGCCATGAATCCC 66828 | ||||||||| || || Sbjct 31471431 TCTTCGCCATGTATACC 31471415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534852892240