Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq6840 105 3e-17 seq6835 86.0 3e-11 >seq6840 Length=32352404 Score = 105 bits (116), Expect = 3e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 |||||||||| |||| ||||| ||||| ||||||||||| | ||| |||||| || Sbjct 674909 AGATGCGTTCGCATATGAACTGGGCAATGCGGTCGCCATGCTTCACTTCGAAGTCCGTGT 674968 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 | ||||| |||||||| || || || | || || | |||| ||| || || |||| Sbjct 674969 CCGAGTGATTGAAGAGGACAACACCTAAATTTCCGCGATAATCCTCGTCCACAACACCGG 675028 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTA 21892 |||| || |||| |||||| | |||||| || || | || || ||||| ||||| Sbjct 675029 CGCCCACATCGATAAAGTTCTTTACGGCCAGCCCGGAACGCGGTGCTACGCGACCGTA 675086 >seq6835 Length=4453435 Score = 86.0 bits (94), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||| ||||| ||||||||| ||| ||| | || |||| || | Sbjct 3804386 TCTCGTCGCCGTCAAAATCGGCATTGTAGGGCGATGTGCAGGACAGATTCATGCGGAACG 3804327 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 || | | ||| | ||| ||| | ||| |||| || | ||||| ||||| Sbjct 3804326 TGGACCA----GGGCAACACCTTCACTCTGTGACCCATCATACTCATCTTGTGCAGCGTC 3804271 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 |||||||||||| ||||| | |||| | || ||||| || | ||||||||||| |||| Sbjct 3804270 GGCTGGCGATTGAAGATGACCAAGTCGTCGTCTCGCAAATGTCGCTCCACCTTGTAGCCG 3804211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084552015176118