Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq6417 237 5e-60 seq1865 205 3e-50 >seq6417 Length=10883 Score = 237 bits (262), Expect = 5e-60 Identities = 338/467 (72%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | ||||||||||||||||||| ||||| ||||| ||| | ||||| Sbjct 5615 GACCCGAAGCGGGGTGATCTACCCATGGCCAGTGTGAAGCGATGGTAAGACGTCGTGGAG 5674 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | |||||||||| | |||||||| | |||||||||| |||||||||||||||||||| | Sbjct 5675 GCGCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGTTGTGGGTAGGGGTGAAAGGCCA 5734 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA 214 | |||||| | ||||||||||||| |||||| |||||||| || || || | Sbjct 5735 ATCAAACTCCGTGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGCAGCGTCGTGTGTTT 5794 Query 215 C-CATCGGGGGTAGAGC-ACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAAACCATT 271 | ||| |||||||| |||| | ||| | || ||| | | | |||| | | Sbjct 5795 CTTGCCGGAGGTAGAGCTACTGGT-TGGTTGAGCGGGAC-TATCATCTTAGCGACGTCAG 5852 Query 272 GCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCG 331 |||||||||||||| | ||| | ||||| |||||| ||| | |||| | || Sbjct 5853 CCAAACTCCGAATGCCGGTAAGTGAGAGCGCGGCAGTGAGACTGCGGGGGATAAGCTTCG 5912 Query 332 TGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAA 391 || ||||||| || | || || | ||||||||||| || | ||||||| | Sbjct 5913 TGGTCGAGAGGGAAACAGCCCAGATCGCCGGCTAAGGCCCCTAAGGGTGTGCTAAGTGGA 5972 Query 392 ACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTT 451 | || || || | | || |||||||| |||| |||||||| |||||||||| || || Sbjct 5973 A--AAGGATGTGCGGTCGCGAAGACAGCCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTG 6029 Query 452 AAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAAT 498 | ||||||||||| |||||||| |||||| | || ||| || ||| Sbjct 6030 AGAGAGTGCGTAATAGCTCACTGGTCGAGTGGCCGTGCGCCGACAAT 6076 >seq1865 Length=1906 Score = 205 bits (226), Expect = 3e-50 Identities = 272/374 (73%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| ||| ||| |||||||||||||||| ||||||||||||| Sbjct 328 CGAGTCTGAATAGGGCGTTTAGTATGTGGTTGTAGACCCGAAACCAGGTGATCTACCCAT 387 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | ||||| ||||| | |||||||| |||||| |||||||||| | |||||||| | Sbjct 388 GTCCAGGGTGAAGTTCAGGTAACACTGAATGGAGGCCCGAACCCACGCACGTTGAAAAGT 447 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||| ||||||||| || |||| | || | ||| |||| ||||||||||||| Sbjct 448 GCGGGGATGAGGTGTGGGTAGCGGAGAAATTCCAATCGAACCTGGAGATAGCTGGTTCTC 507 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATC--GGGGGTAGAGCACTGTTAT 238 ||||||| |||||| ||||| | | ||| || |||||||||||||| Sbjct 508 TCCGAAATAGCTTTAGGGCTAGCCTCGTGATGAAGAATCCTGGAGGTAGAGCACTGTTTG 567 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 | ||||||| ||| || ||||| || |||||||||||||| | | || || Sbjct 568 GACTAGGGGTCCATCCCGGATTACCGAATTCAGACAAACTCCGAATGCCAGTGATTTATA 627 Query 299 CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | ||||||| || | ||| |||| ||||| | | ||| || | || ||| | Sbjct 628 -CACGGGAGTCAGACTGCGAGTGATAAGATCCGTAGTCAAAAGGGAAACAGCCCAGACCA 686 Query 359 TCAGCTAAGGCCCC 372 ||||||||| ||| Sbjct 687 CCAGCTAAGGTCCC 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688821009920