Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value SEQ21083 536 3e-148 SEQ22413 217 4e-52 SEQ32968 196 1e-45 SEQ43844 163 7e-36 SEQ44349 125 2e-24 SEQ24884 80.6 7e-11 >SEQ21083 Length=3994 Score = 536 bits (594), Expect = 3e-148 Identities = 700/973 (72%), Gaps = 71/973 (7%) Strand=Plus/Minus Query 21659 AGGACTACGACCCCGCCGTCATCGACGAGTTCCGCAAGGAATCCGCCATCCTCGACTCGC 21718 ||||||||||||| |||||||||||||||||||| ||| ||||| |||||||| || Sbjct 2792 AGGACTACGACCCGGCCGTCATCGACGAGTTCCGGAAGTCCTCCGCTCTCCTCGACGCGA 2733 Query 21719 TCATCTTCGACGACGTCGTCAACCCCGCGGGCGGTGGCGCCACCCTCGACTACGGCTACC 21778 | ||||||||| || ||||||||||| || ||||| || || ||||||||||| Sbjct 2732 TGATCTTCGACACCGCGGTCAACCCCGCCCAGGGCGGCGCGACGCTGACCTACGGCTACC 2673 Query 21779 GGCGCCTCATCACCCAG-CCGACCGCCGACTTCCGTGCACTCAACACCGAGTACACGCCG 21837 | ||||| |||||||| ||||| || | ||||| || ||||| |||||||| || Sbjct 2672 GCCGCCTGGTCACCCAGGCCGAC-GCTGCATTCCGCGCGATCAACTCCGAGTACGCGGAC 2614 Query 21838 GCGAACGTCACCACCCAGAAGTACTC-GACGACCCTCGCCGTCCTCGGTGGCTCATTCGA 21896 | |||||||||||| | ||| | ||||| |||| |||||||||||| | ||| | Sbjct 2613 TCCAACGTCACCACCGCCCGCTTCTCCGTCGACC-TCGCGGTCCTCGGTGGCGCGTTCAA 2555 Query 21897 GGTGGACCGCGTCATCGCGAAGATCGGCGCCAACGCATCTGGCACCGTCGCCCTGAACAT 21956 | | ||||||||| |||| || ||||| | || || | ||| ||||| | || Sbjct 2554 GATCGACCGCGTCCTCGCCAACCTCGGCCCGGCAGCCTCCAACGAGGTCACCCTGCAGAT 2495 Query 21957 GTCGCAGAAGATCAAGGCGGCCCGCACCAAGTTCCAGGACGCCATCATCAACGGCGACAC 22016 | |||||||||||||| || |||| |||| |||||| | |||||||||| | | Sbjct 2494 GGGCCAGAAGATCAAGGCCGCGAACACCGCGTTCGCTGACGCCGTGATCAACGGCGTCGC 2435 Query 22017 CGCAGTCGACGCGAACGGCTTCGACGGACTCGACAAGGCCCTCGTCGGCACCACCACCGA 22076 ||| ||| ||| |||||| Sbjct 2434 CGCCGTCNNTCCGA----------------------------------------CACCGA 2415 Query 22077 GTTCAACGCCGGCAAGGTCACCGACTGGACCGACTTCGACACCAACCCGCGGGCCGAGCA 22136 | || ||||| | | | ||||||| |||||||||||||| || | ||||||||||| Sbjct 2414 GATCGGCGCCGACGACACCGTCGACTGGTCCGACTTCGACACCGACACCCGGGCCGAGCA 2355 Query 22137 CAAGGCCCTCGACGCGATCGACGAGTTCCTGTCGCTAC-TCGACGGTGCCCCTACCGTCA 22195 |||||||||||||| |||||||||||||| || || ||||||| |||| ||||||| Sbjct 2354 CAAGGCCCTCGACGTCATCGACGAGTTCCTCG-GCAACCTCGACGGCACCCCGACCGTCA 2296 Query 22196 TCCTCGGCAACA--GCAAGGCCCTCGCCCGCGTCCGCGCCGCGGTCCGGCGCGCCGGCCA 22253 |||||||||||| || | |||||||||||||||||||||| | ||| ||||||||||| Sbjct 2295 TCCTCGGCAACAAGGCCA--CCCTCGCCCGCGTCCGCGCCGCCGCCCGCCGCGCCGGCCA 2238 Query 22254 GTACACGAAGGACCCCGTCGAGGGTCTCCTCGGCCCGGGCGGTCGCCCTGTGGTCCGCGA 22313 |||||| |||||||| ||||||| ||| ||||| | ||||| || || | | ||||| Sbjct 2237 GTACACCAAGGACCCGGTCGAGGACCTCGTCGGCGCCGGCGGCCGGCCGATCGAGCGCGA 2178 Query 22314 AACCTACGGCGGCGTTCTCCTGGTCGACCCGGGTGCCAAGGCTGGCAGCAACAACCCGAT 22373 |||||||||| || | | ||||||||||| |||||| |||| |||| ||||||| Sbjct 2177 GTCCTACGGCGGAGTCACCTTCGTCGACCCGGGCAACAAGGCCGGCACCAACGACCCGAT 2118 Query 22374 CGTCCCGGTCGCTACTCGCACCGTCGCAACGGTGTCGACGACCGGCCTCACCGACCTGTA 22433 | ||||| ||| |||| || || ||| ||| ||| || Sbjct 2117 CATCCCGATCG----ACGCA----------------GA-GAAGGGCACCACGTCCCTCTA 2079 Query 22434 CGCCTACCGCGTCGGCCTCGACGGCTTCCATGGCGTCTCCACGGTCGGCGGCCAGCTGGT 22493 ||| |||| ||||||||||||||||||| || ||| | || | ||| |||| || Sbjct 2078 CGCGGTCCGCATCGGCCTCGACGGCTTCCACGGAGTCACGACCACCACCGGTGAGCTCGT 2019 Query 22494 GGAGTCGTGGCTGCCGGACTTCTCCTCGGCTGGTGCGGTGAAGAAGGGCGAGGTCGAACT 22553 | | || ||||||||||||||| | | | || ||||| ||| ||||||||||| || Sbjct 2018 GCACTCCTGGCTGCCGGACTTCACTACCTCCGGCGCGGTCAAGCGCGGCGAGGTCGAGCT 1959 Query 22554 CGGCCCGGTGGGCGTCGCCCTCAAGTCGACGAAGGCTGCGGCGGTGTTCCGCAACATCAA 22613 ||||||||| | ||||||||||||| |||||||||| || || ||| | |||||| |||| Sbjct 1958 CGGCCCGGTCGCCGTCGCCCTCAAGGCGACGAAGGCGGCCGCCGTGCTGCGCAACGTCAA 1899 Query 22614 GGTCCAGTAGACC 22626 ||| | |||| || Sbjct 1898 GGTTCGGTAGCCC 1886 >SEQ22413 Length=7522 Score = 217 bits (240), Expect = 4e-52 Identities = 257/342 (75%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 12171 GACTGACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCAC 12230 ||| ||| ||| ||||||||| |||||||||| |||||||||||||||||||| | ||| Sbjct 3692 GACAGACCCCC--ATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACAC 3635 Query 12231 GCCGGCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACG-TTCGACA 12289 || |||||| || ||| |||||||| || || ||||| ||||| ||| |||||| Sbjct 3634 CCCCAGCGGTGCCGCGGTCACCAACTTCCGGGTGGCTTCCACACCGCG-ACGCTTCGACT 3576 Query 12290 AGCAGGCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTG 12349 ||| | ||| ||||| |||| ||||| ||||| || |||| | | ||||| Sbjct 3575 CACAGACCAACCAGTGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCA 3516 Query 12350 AGGCCGCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCA 12409 |||||||||||||||||| | ||| || |||| ||||| |||||||||||| Sbjct 3515 CCGCCGCCGAGAACGTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGC- 3457 Query 12410 AGCTCAAGTC-CCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTG 12468 | | ||| || ||| |||||| || ||||| |||||||| ||||| |||| || Sbjct 3456 CGGTTGCGTCAACGGTCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTG 3397 Query 12469 GAGGTCGACGAGATCGGCCCCAGCCTCCGCTACGCCACCGCC 12510 ||| ||||||| |||||||| || ||||||||||||||| Sbjct 3396 GAGACCGACGAGGTCGGCCCCTCGCTGCGCTACGCCACCGCC 3355 >SEQ32968 Length=2597 Score = 196 bits (216), Expect = 1e-45 Identities = 249/339 (73%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 || |||| |||||| || |||||||||| || || ||| || | ||| |||||| Sbjct 2188 GATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCC 2129 Query 12235 GCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAG 12294 || || || ||||| |||||| ||||||||| ||||| || ||||||| | || Sbjct 2128 AGTGGCGCGGCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCGAAG 2069 Query 12295 GCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCC 12354 ||||| ||||| ||||||||||| |||||| | ||||| | || ||||| ||||| Sbjct 2068 TCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCC 2009 Query 12355 GCCGAGAACGTCGCCGAGAGCTTG-TCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCT 12413 |||||||||||||| | | || | |||| | || || |||||| ||||| ||| Sbjct 2008 GCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGAC-CGCGTGATCGTCTCCGGCCGGCT 1950 Query 12414 ---CAAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGA 12470 | || || ||| ||| || |||||||| |||||||| ||||| |||| |||| Sbjct 1949 GCGCCAG---CGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGA 1893 Query 12471 GGTCGACGAGATCGGCCCCAGCCTCCGCTACGCCACCGC 12509 |||||||||| ||||||| ||||| ||||||||||| Sbjct 1892 GGTCGACGAGGTCGGCCCGTCTCTCCGGTACGCCACCGC 1854 >SEQ43844 Length=619 Score = 163 bits (180), Expect = 7e-36 Identities = 237/335 (71%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 ||||||| ||||||||| |||||||||| || || |||||||| |||| | ||| ||| Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60 Query 12235 GCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAG 12294 |||| || ||||| |||| | ||||| ||||| || ||||||||| |||||||| Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCAG 120 Query 12295 GCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCC 12354 | ||| ||||| |||| | || || |||||| | || | | ||||||| |||| Sbjct 121 ACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGCA 180 Query 12355 GCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCTC 12414 || |||||||| || | ||| || ||| ||||| |||||| |||||| ||| Sbjct 181 GCGGAGAACGTGGCGAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAATCTC 240 Query 12415 AAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGGTC 12474 || ||| |||| || || || | ||| ||||| ||| | |||| Sbjct 241 CGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGTGTACGAGATCGAGGCG 300 Query 12475 GACGAGATCGGCCCCAGCCTCCGCTACGCCACCGC 12509 |||||| ||||||| |||||| ||||||||||| Sbjct 301 GACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGC 335 >SEQ44349 Length=1126 Score = 125 bits (138), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 5448 CGACGACCCCGACTACATCCCGACGCCCGTGCGCTGGGACGAGGCCAAGGCGCGGAAGGC 5507 |||||||||||||| || | || ||||| ||||||| ||||||||| ||| || Sbjct 670 CGACGACCCCGACTTCACCTTCACCGCCGTG---TGGGACGTCGCCAAGGCGAAGAATGC 614 Query 5508 TGGCAAGTGGGGCACCAAGGGGCCGTGGACGAACTACCCGGGCGCAATGCTCCGCTCCCG 5567 |||||||| |||||| |||||||| | ||||||| ||| ||||||||| |||| Sbjct 613 GAAGTTGTGGGGCAACAAGGGTCCGTGGACCCAGTACCCGGCCGCCATGCTCCGCGCCCG 554 Query 5568 CGCCATCACCGAGGCTGCCCGCATGTGGGCCTCCGACGCCCTGTTCGGTGTCATCTACAC 5627 |||||||| ||||| | ||||||| | || |||| | || ||| | |||||||| Sbjct 553 CGCCATCAGCGAGGTCGTCCGCATGGGCGCGCAGGACGTCATGGCCGGCGGGATCTACAC 494 Query 5628 CGCGGAAGAGCTGGG 5642 ||||||| || || Sbjct 493 TCCGGAAGAACTTGG 479 >SEQ24884 Length=1939 Score = 80.6 bits (88), Expect = 7e-11 Identities = 324/496 (65%), Gaps = 26/496 (5%) Strand=Plus/Minus Query 34515 CAGGAGACGGGCTACTGGTGCGGACCCGCGTCCGCGCAGGTGGTCCTGAA--CTCG--CG 34570 ||||| || |||||||||||| || ||| || ||||| | | | | | || | Sbjct 939 CAGGACACCTACTACTGGTGCGGTCCGGCGACCACGCAGACGCTGATTCAGGCCCGTACC 880 Query 34571 GGGCATCAACGTCGCAGAGGCGACCCTCGCTAGCGATATCGGTACGACCTGGAACGGCAC 34630 ||||| | |||| |||||||| ||||| || || |||| |||||| | | || || Sbjct 879 GGGCA-GATGGTCGACGAGGCGACGCTCGCCAGTGAGCTCGGCACGACCGTGGAGGGGAC 821 Query 34631 CGACTTCATCGGGCTGATCGAGCGCGTGCTGGACCGCCGCGTACCCGAGGCGAACTACAC 34690 || | |||| | | ||| || || || || | || | | | || || || Sbjct 820 CGCCAATGTCGGTCAGCTCGCCCGGGTACTCAACGAC--CGAATCGGCGGGGAGTGGCAG 763 Query 34691 GTCGGTGTCGATGCCGAATGATCCGCCGACCGGCGCGCAGAAGGACCGCCTATGG-CGCG 34749 ||||| | | |||||||| || ||||| || || |||| || | | ||| |||| Sbjct 762 GTCGGCG-CCATGCCGAACGACCCGCCCCACGACGACGAGAAAGAGCAGTTGTGGTCGCG 704 Query 34750 ACATCCTTCGC-TCCGTGAACGCCGGCTGGGGCGTCATCGTGAACATCGTTGCGCCGCCG 34808 ||| | |||| ||| | |||| |||| || || | ||||||| | |||||| Sbjct 703 -CAT-CGTCGCGTCCATCAACGGCGGCGTAGGGGTGGCGGCGAACATCTGGGTCCCGCCG 646 Query 34809 AGTAACTACCCCCGCGGCGTGC-ACGGGTCCAC--ATCACCCGCA-TACGGCGGCGGCAC 34864 |||||||| || ||||| | || ||||| | ||| ||| |||||||| || Sbjct 645 GAAAACTACCCGCG-GGCGTCCTACACCTCCACGGAGAACCTGCACTACGGCGGTGGATT 587 Query 34865 CGTCTACCACTACATGACGGTCATGGGCTACG---------ACGACGTGGCCCGCGCCGT 34915 |||| |||||| | |||||||||| |||| || || | |||| ||| Sbjct 586 CGTCATGCACTACCTCGCGGTCATGGGGTACGCCCGCGACACCGGCGGTGTCCGCCACGT 527 Query 34916 ATGGATCGCCGATTCAGGCTTCAGCCCTTACGGCTACTGGATGAGCTTCGAGCAGCTCAC 34975 ||| | ||||| || ||| ||| |||||| ||| ||| ||||| ||| || | Sbjct 526 CTGGCTGGCCGACAGCGGGTTCGACCCGCACGGCTCGTGGGTGACGTTCGACCAGTTCGC 467 Query 34976 CACCCTCATCCCACCG 34991 |||| | ||||| ||| Sbjct 466 CACCATGATCCCCCCG 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126126108522360