Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031076.1 Length=38071 Score E Sequences producing significant alignments: (Bits) Value SEQ43844 136 1e-27 SEQ22413 105 2e-18 SEQ32968 89.7 1e-13 >SEQ43844 Length=619 Score = 136 bits (150), Expect = 1e-27 Identities = 223/316 (71%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 34859 GAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCAAT 34918 || ||||| ||||||||||| ||||||||| ||||||||||||||||| || ||| Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60 Query 34919 TCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGCAA 34978 || ||| ||||| |||| | ||||||||||| || ||||| ||| || ||| Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCAG 120 Query 34979 GCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGCCG 35038 ||||| | ||| |||| | ||| || |||||||| ||| | ||||||| ||| | Sbjct 121 ACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGCA 180 Query 35039 GCCGAGAACGTGGCCGAATCG-CTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTCT 35097 || |||||||||| |||| | ||| |||||| || ||||||||| || ||| Sbjct 181 GCGGAGAACGTGG-CGAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAATCT 239 Query 35098 CCGGGCGCGCAGCTACGACGACCGCGA-CGGAAACCGTCGCACTGTGATCGGGATCGAAG 35156 ||| ||| |||||| | | || ||| || ||||| ||| || |||||| | Sbjct 240 CCGCCAGCGGTCCTACGA-GTCGAAGACCGGCGACACGCGCACCGTGTACGAGATCGAGG 298 Query 35157 TCGATGACGTGGGCCC 35172 || || || ||||| Sbjct 299 CGGACGAGGTCGGCCC 314 >SEQ22413 Length=7522 Score = 105 bits (116), Expect = 2e-18 Identities = 163/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 34862 ACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCAATTCG 34921 ||||| ||||||||||| ||||||||| || |||||||| |||| || ||| | Sbjct 3687 ACCCCCATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCC---CC 3631 Query 34922 GGCATTGCCG---TCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGCAA 34978 || ||||| || |||||||| || || |||||||| || |||||| || Sbjct 3630 AGCGGTGCCGCGGTCACCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAG 3571 Query 34979 GCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGT-CAGCC 35037 ||||| | ||| |||| ||||||| |||||||| ||||| | ||||| | ||| Sbjct 3570 ACCAACCAGTGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCC 3511 Query 35038 GGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTC 35086 | |||||||||| ||| | ||| ||||||| || ||||||||| Sbjct 3510 G-CCGAGAACGTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTC 3463 >SEQ32968 Length=2597 Score = 89.7 bits (98), Expect = 1e-13 Identities = 211/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 34859 GAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATAC--CA 34916 || |||| ||||| |||| ||||||||| || ||| || || | || || | Sbjct 2188 GATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCC 2129 Query 34917 ATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGC 34976 | | | || || ||||| |||||| |||||| || || || || |||||| | Sbjct 2128 AGTGGCGCG--GCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCGA 2071 Query 34977 AAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGC 35036 | | ||| | ||| ||||| ||||| |||||||| |||| || ||||| ||| Sbjct 2070 AGTCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGG 2011 Query 35037 CGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTC 35096 | ||||||||||| || | || ||| |||||| || ||||||||| || || | Sbjct 2010 CCGCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGC 1951 Query 35097 TCCGGGCGCGCAGCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCGAAG 35156 | || ||| |||||| ||| || || | ||||| ||| ||| | | || | Sbjct 1950 TGCGCCAGCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGG 1891 Query 35157 TCGATGACGTGGGCCCG 35173 |||| || || |||||| Sbjct 1890 TCGACGAGGTCGGCCCG 1874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121638966564330