Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 488 4e-133 seq2 360 2e-94 >seq4 Length=22154029 Score = 488 bits (540), Expect = 4e-133 Identities = 616/841 (73%), Gaps = 9/841 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || |||||||| ||||||||||| ||| | ||||| || || |||| Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| |||||| | || | || || || |||||| | || |||||||||| Sbjct 3241089 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCG 3241030 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || || || ||||||||| | | || || ||| |||||||||||| | Sbjct 3241029 CCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3240970 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | || || ||||||||||| ||||| || ||||||||||||||||| ||||||||||||| Sbjct 3240969 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGATGT 3240910 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || || |||||||| || || ||||| | | || | || ||||||||| Sbjct 3240909 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAATG 3240850 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 |||| || || || || || || ||||| || || |||||||| || |||||| | Sbjct 3240849 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTTCAT 3240790 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | |||| | ||||| || || | | || ||||| | || ||||| | || | Sbjct 3240789 CGAAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCT 3240730 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 |||| ||| |||||| | ||||||||| ||||||| ||||| || ||||| ||||||| Sbjct 3240729 TCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGA 3240670 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 | ||| |||||||||||| ||||||||||||||| |||||||||| |||||||| || Sbjct 3240669 CGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTCATGA 3240610 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGT-TC 61702 | ||| || || ||||| | || || | || ||||||| | |||||| | || Sbjct 3240609 TGTTC---CGGCATTTGGTGCAACGGCCCAGCCG--GGAGCGTATCATCGAGATTATCTC 3240555 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 | || || || || || || || || ||||| || || ||| |||||||| | || | Sbjct 3240554 G-GATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAATTTGATTG 3240496 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 |||||||||||| | | ||||| || |||||||||||||| || || |||||| |||| | Sbjct 3240495 GCATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGGATCGTCTGCTGGTGG 3240436 Query 61823 ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 | | ||| | ||||| |||||||| || ||||| |||||||| ||||| | Sbjct 3240435 AACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTCATGGAGATGATCT 3240376 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTG 61942 ||||||||||||| || || ||||||||||| || || || ||||||||| |||| | Sbjct 3240375 CGCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGTTGGAGAATATCAACGTATGGGCG 3240316 Query 61943 T 61943 | Sbjct 3240315 T 3240315 >seq2 Length=4222574 Score = 360 bits (398), Expect = 2e-94 Identities = 1153/1775 (65%), Gaps = 39/1775 (2%) Strand=Plus/Minus Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140 || ||||| || || |||||||| || | || || | |||||| |||||||||||||| Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964 Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200 || || || ||| | ||| ||||| || |||| ||||||| ||||||| || || || Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904 Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCA 65260 || || ||||| || |||||||| ||||| || | || | || || ||||| | Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844 Query 65261 ATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGG 65319 || | || | || |||||||| || || || |||| ||| | || | || Sbjct 4215843 ATAGTT-GATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGG 4215785 Query 65320 AATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTC 65379 ||| ||||| | || | |||||||||| || || || |||| |||| || Sbjct 4215784 AATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTC 4215725 Query 65380 TGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTC 65439 ||||||| | | ||| | | || | | |||||| | || | ||||| || || Sbjct 4215724 ATCCCACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTC 4215665 Query 65440 GCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTT 65499 |||||||| ||| || | || ||||| || || || || || || ||| |||| Sbjct 4215664 GCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTT 4215605 Query 65500 GCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAA 65559 ||| | ||||| ||||||||||| || ||||||||||| || | || || |||| | Sbjct 4215604 GCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGAC 4215545 Query 65560 TCC--GTTCA--TTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615 || ||| | || || || | | || | ||||||| ||| | | | | | | Sbjct 4215544 ACCATGTTGCGCTATCGATTTTTTAAG--AA--CATCCCAGTCCCAAA--GATCTGTTGG 4215491 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGA 65675 ||| | | |||||||| | |||| |||| | || | || || | Sbjct 4215490 CGATTTATTC----CACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACAT 4215435 Query 65676 AACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 || | || || ||| || || ||| || | || |||||||| || || || || | Sbjct 4215434 AAGTCTCATATGGTCCATC-TCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAG 4215376 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || || || |||||||| | |||| | | ||| |||| || ||||| | ||| Sbjct 4215375 TATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGA-ATA 4215317 Query 65795 CC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 || ||| | | || | ||| || | ||||| |||||||| || || ||||| || || Sbjct 4215316 CCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCG 4215257 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 ||||| || | | || || || | |||||||||||| ||||| || || || || Sbjct 4215256 TAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAA 4215197 Query 65914 ATTGCGTGTCACCACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTAGGA 65971 || || || | | | ||| || | | || || ||| | ||| Sbjct 4215196 GTTTTTCGTAACAATTTTA--GTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTT--- 4215142 Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 || | || ||||||| | ||| |||| || || | || || ||| Sbjct 4215141 ---TCATGCGT---------CACAAACATATTAAGTGCAATTGACGCCAAATTACACACA 4215094 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 ||||| || || || || | |||||| || ||||| ||||||||||||||||| ||| Sbjct 4215093 GCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATA 4215034 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 || || | ||| ||||| || || || | || || | |||||| | | |||||| || Sbjct 4215033 GTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGT 4214974 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211 || || ||||| ||||| || || || ||||| |||||||| | ||||| | Sbjct 4214973 GTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAGATTGAGCCTTAATAACT 4214914 Query 66212 CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 || ||| | |||| |||| || | || |||| ||| || ||||||||| Sbjct 4214913 CGATTCGCTCGTCCTTCTTGTTCATATTTGATATAAAGGTTTTCAAAATCTTCACCCCAA 4214854 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || || | || | ||||| || ||||||||||| || |||||||| ||| ||| Sbjct 4214853 ACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTGACCAATCTTCATTGGCTTCA 4214794 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 ||||| |||||| |||||||| ||||| | || | || |||||||| || || || Sbjct 4214793 ACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGT 4214734 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 ||||| | || |||||| | ||| | || || |||| || | ||||| || Sbjct 4214733 TCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGC 4214674 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || | ||| || || || | || | ||| || || || || ||||| || || || Sbjct 4214673 TCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCC 4214614 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 ||||| || || || | ||||| ||||| | || || || | || || || || Sbjct 4214613 ACATTATTAAAAACTCTTAACATTGGTACTAATCCATTTGAAGTACCGTTCGTTCCACAA 4214554 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 || | | |||| || || ||| |||||||||||| ||||| ||||| |||| ||| Sbjct 4214553 ATTGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTT 4214494 Query 66632 GAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATG 66691 || || || || | | |||| || || || ||||| || ||| | || Sbjct 4214493 GAAATCATTGCGCATTGCTCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATA 4214434 Query 66692 GTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGT 66751 || | ||| |||||||| | ||| || | |||||| || | || || || ||| Sbjct 4214433 GTTAAGAGAAAGCATGAAGACAATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGT 4214374 Query 66752 GTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATG 66811 | || || ||||| || | ||| | ||||||| || || | ||| |||||| Sbjct 4214373 GATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATA 4214314 Query 66812 TTTTCGCCATGAATCCCGAGTGCACATCGCATCAG 66846 | ||||||||| || || | ||| ||||| || Sbjct 4214313 TCTTCGCCATGTATACCTATAGCAACACGCATTAG 4214279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528980315920