Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq300 203 6e-50 seq73 203 6e-50 seq22 203 6e-50 seq15 203 6e-50 seq8 203 6e-50 seq1207 154 3e-35 >seq300 Length=136790 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 88289 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 88231 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 88230 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 88173 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 88172 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 88117 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 88116 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 88057 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 88056 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 87997 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 87996 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 87966 >seq73 Length=471550 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 241218 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 241276 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 241277 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 241334 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 241335 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 241390 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 241391 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 241450 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 241451 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 241510 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 241511 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 241541 >seq22 Length=1073832 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 474481 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 474423 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 474422 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 474365 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 474364 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 474309 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 474308 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 474249 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 474248 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 474189 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 474188 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 474158 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 1050287 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 1050345 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 1050346 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 1050403 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 1050404 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 1050459 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 1050460 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 1050519 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 1050520 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 1050579 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 1050580 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 1050610 >seq15 Length=1383265 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 155105 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 155047 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 155046 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 154989 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 154988 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 154933 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 154932 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 154873 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 154872 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 154813 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 154812 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 154782 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 331522 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 331464 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 331463 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 331406 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 331405 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 331350 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 331349 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 331290 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 331289 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 331230 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 331229 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 331199 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 1024684 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 1024626 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 1024625 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 1024568 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 1024567 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 1024512 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 1024511 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 1024452 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 1024451 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 1024392 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 1024391 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 1024361 >seq8 Length=1553183 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 330121 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 330063 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 330062 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 330005 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 330004 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 329949 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 329948 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 329889 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 329888 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 329829 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 329828 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 329798 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 901926 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 901868 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 901867 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 901810 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 901809 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTTGAGTTG 901754 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 901753 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 901694 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 901693 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 901634 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 901633 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 901603 >seq1207 Length=4506 Score = 154 bits (170), Expect = 3e-35 Identities = 198/267 (74%), Gaps = 7/267 (3%) Strand=Plus/Plus Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA-GCGAGGTTAA 128 ||||| ||||||||||||| | ||||| || ||||||| ||| || || ||||||| Sbjct 2933 GGTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGTTCCCGTGCAAGGTTAA 2990 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGG 187 || | || ||| ||||| || ||||||||| || || ||||||| | ||| |||| Sbjct 2991 GG--TGAAGAGCCGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGAAGTAGTACGTGG 3047 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 ||||| ||||||| ||||||||||| | |||| ||||| |||||||| || Sbjct 3048 ACGTAGACCCGAAACCGGGTGATCTACCCCTGTCCAGGGTGAAGGTGCGGTAACACGCAC 3107 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| ||||||| |||||||||||| |||||| | |||||| || |||| Sbjct 3108 TGGAGGCCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGGGGGTAGCGGAGAAA 3167 Query 308 GGCCAATCAAACTGGGAAATAGCTCGT 334 |||||| |||| ||| |||||| || Sbjct 3168 TTCCAATCGAACTCGGAGATAGCTGGT 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972781176320