Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1207 217 2e-54 seq300 154 2e-35 seq73 154 2e-35 seq22 154 2e-35 seq15 154 2e-35 seq8 154 2e-35 >seq1207 Length=4506 Score = 217 bits (240), Expect = 2e-54 Identities = 198/248 (80%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| |||||||| ||| ||||| | |||||||| Sbjct 4222 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCCTTACGG-CTTCGCAC 4164 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| || ||| ||||| || || | ||| Sbjct 4163 AGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCTCGTGCTAT 4104 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| || | | | ||||||||||||||||||||||||||| ||||||||||| Sbjct 4103 TCAC-------ACTACCGG-GGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 4052 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| ||| |||||||| ||||||| | | | |||||||||||| Sbjct 4051 TTCCTTAACGAGAGTTCTTCCGCGCGCCTTAGAATTCTCTTCTCGCCTACCTGTGTCGGT 3992 Query 241 TTACGGTA 248 || ||||| Sbjct 3991 TTGCGGTA 3984 >seq300 Length=136790 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 87037 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 87095 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 87096 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 87148 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 87149 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 87204 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 87205 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 87264 Query 240 TTTACGGTA 248 ||| |||| Sbjct 87265 TTTCGGGTA 87273 >seq73 Length=471550 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 242470 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 242412 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 242411 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 242359 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 242358 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 242303 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 242302 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 242243 Query 240 TTTACGGTA 248 ||| |||| Sbjct 242242 TTTCGGGTA 242234 >seq22 Length=1073832 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 473229 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 473287 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 473288 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 473340 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 473341 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 473396 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 473397 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 473456 Query 240 TTTACGGTA 248 ||| |||| Sbjct 473457 TTTCGGGTA 473465 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 1051539 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 1051481 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 1051480 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 1051428 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 1051427 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 1051372 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 1051371 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 1051312 Query 240 TTTACGGTA 248 ||| |||| Sbjct 1051311 TTTCGGGTA 1051303 >seq15 Length=1383265 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 153853 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 153911 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 153912 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 153964 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 153965 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 154020 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 154021 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 154080 Query 240 TTTACGGTA 248 ||| |||| Sbjct 154081 TTTCGGGTA 154089 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 330270 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 330328 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 330329 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 330381 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 330382 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 330437 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 330438 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 330497 Query 240 TTTACGGTA 248 ||| |||| Sbjct 330498 TTTCGGGTA 330506 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 1023432 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 1023490 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 1023491 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 1023543 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 1023544 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 1023599 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 1023600 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 1023659 Query 240 TTTACGGTA 248 ||| |||| Sbjct 1023660 TTTCGGGTA 1023668 >seq8 Length=1553183 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 328869 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 328927 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 328928 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 328980 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 328981 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 329036 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 329037 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 329096 Query 240 TTTACGGTA 248 ||| |||| Sbjct 329097 TTTCGGGTA 329105 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 900674 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 900732 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 900733 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 900785 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 900786 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 900841 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 900842 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 900901 Query 240 TTTACGGTA 248 ||| |||| Sbjct 900902 TTTCGGGTA 900910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694386983255