Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq300 111 2e-22 seq73 111 2e-22 seq22 111 2e-22 seq15 111 2e-22 seq8 111 2e-22 seq1207 82.4 7e-14 >seq300 Length=136790 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 87146 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 87087 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 87086 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 87038 >seq73 Length=471550 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 242361 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 242420 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 242421 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 242469 >seq22 Length=1073832 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 473338 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 473279 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 473278 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 473230 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 1051430 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 1051489 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1051490 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1051538 >seq15 Length=1383265 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 153962 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 153903 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 153902 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 153854 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 330379 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 330320 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 330319 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 330271 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 1023541 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 1023482 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1023481 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1023433 >seq8 Length=1553183 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 328978 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 328919 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 328918 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 328870 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44 GCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACA 103 || ||| | | | |||||| | ||||||||||| ||||||||||| |||||| || Sbjct 900783 GCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGT 900724 Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 900723 CGAAAGACGACGTATAGGGCCTGACGCCTGCCCGGTGCCGGAAGGTTAA 900675 >seq1207 Length=4506 Score = 82.4 bits (90), Expect = 7e-14 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| || ||| || || ||| || ||||| Sbjct 4129 AGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTGTGCGAAGCCGTAAGGCGAAGTATA 4188 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||||||||||||||||| |||||||||| Sbjct 4189 CGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAA 4221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476791062235