Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1207 430 3e-118 seq300 295 1e-77 seq73 295 1e-77 seq22 295 1e-77 seq15 295 1e-77 seq8 295 1e-77 >seq1207 Length=4506 Score = 430 bits (476), Expect = 3e-118 Identities = 323/378 (85%), Gaps = 15/378 (4%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || |||| |||||||||| ||| | |||||||||| |||||| Sbjct 4411 TAACCTGCATCTTCACAGGTATTAAAATTTCACCGGATCTCTCGTTGAGACAGCGCCCAA 4352 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct 4351 GTCGTTACGCCATTCGTGCGGGTCAGAATTTACCTGACAAGGAATTTCGCTACCTTAGGA 4292 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGCT-CTA 178 |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||| Sbjct 4291 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGGTTCACAGCTTCGGATTGCTCCTA 4232 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || ||||||||||||||||||||||||||||||||||| | ||||| ||| ||| || Sbjct 4231 ACCACTCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCCTTACGG 4172 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---- 294 ||| ||| | ||||||||||||| ||||||||||||||||||| ||| |||||||| Sbjct 4171 CTTCGCACAGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCT 4112 Query 295 --TGTCATAGACA-------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 || || ||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 4111 CGTGCTATTCACACTACCGGGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 4052 Query 346 TTCCTTAACAATAGTTCT 363 ||||||||| | |||||| Sbjct 4051 TTCCTTAACGAGAGTTCT 4034 >seq300 Length=136790 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 86859 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 86918 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 86919 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 86978 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 86979 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 87029 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 87030 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 87089 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 87090 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 87123 >seq73 Length=471550 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 242648 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 242589 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 242588 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 242529 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 242528 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 242478 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 242477 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 242418 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 242417 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 242384 >seq22 Length=1073832 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 473051 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 473110 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 473111 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 473170 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 473171 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 473221 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 473222 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 473281 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 473282 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 473315 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 1051717 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 1051658 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1051657 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1051598 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 1051597 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 1051547 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 1051546 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 1051487 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 1051486 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 1051453 >seq15 Length=1383265 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 153675 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 153734 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 153735 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 153794 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 153795 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 153845 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 153846 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 153905 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 153906 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 153939 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 330092 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 330151 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 330152 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 330211 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 330212 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 330262 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 330263 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 330322 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 330323 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 330356 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 1023254 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 1023313 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1023314 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1023373 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 1023374 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 1023424 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 1023425 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 1023484 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 1023485 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 1023518 >seq8 Length=1553183 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 328691 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 328750 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 328751 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 328810 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 328811 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 328861 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 328862 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 328921 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 328922 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 328955 Score = 295 bits (326), Expect = 1e-77 Identities = 229/274 (84%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||||||| |||| | ||||||| | ||| | || | ||||||| | || Sbjct 900496 TACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGCGGGGAA 900555 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 900556 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 900615 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||||| || Sbjct 900616 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTC---------AGTGCTCTCAC 900666 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 900667 ACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTCGACT 900726 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 | ||||| ||||||||||| |||||||||||| Sbjct 900727 TCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCT 900760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062379442560