Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq300 163 6e-38
seq73 163 6e-38
seq22 163 6e-38
seq15 163 6e-38
seq8 163 6e-38
>seq300
Length=136790
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 86680 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 86621
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 86620 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 86561
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 86560 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 86501
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 86500 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 86451
>seq73
Length=471550
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 242827 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 242886
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 242887 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 242946
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 242947 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 243006
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 243007 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 243056
>seq22
Length=1073832
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 472872 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 472813
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 472812 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 472753
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 472752 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 472693
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 472692 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 472643
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1051896 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 1051955
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 1051956 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 1052015
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 1052016 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 1052075
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 1052076 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 1052125
>seq15
Length=1383265
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 153496 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 153437
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 153436 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 153377
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 153376 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 153317
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 153316 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 153267
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 329913 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 329854
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 329853 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 329794
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 329793 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 329734
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 329733 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 329684
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1023075 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 1023016
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 1023015 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 1022956
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 1022955 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 1022896
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 1022895 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 1022846
>seq8
Length=1553183
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 328512 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 328453
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 328452 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 328393
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 328392 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 328333
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 328332 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 328283
Score = 163 bits (180), Expect = 6e-38
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900317 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 900258
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
||| | | | | ||||| || ||||||| | ||||||| |||| |||
Sbjct 900257 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 900198
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| | || || ||||| |||||||||||| | || |||||||| ||
Sbjct 900197 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 900138
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 900137 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 900088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982380990560
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