Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq300 136 4e-30 seq73 136 4e-30 seq22 136 4e-30 seq15 136 4e-30 seq8 136 4e-30 seq1207 134 2e-29 >seq300 Length=136790 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 86836 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 86895 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 86896 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 86955 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 86956 CAAGGAATTTCGCTACCTTAGGACCGTTA 86984 >seq73 Length=471550 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 242671 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 242612 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 242611 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 242552 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 242551 CAAGGAATTTCGCTACCTTAGGACCGTTA 242523 >seq22 Length=1073832 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 473028 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 473087 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 473088 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 473147 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 473148 CAAGGAATTTCGCTACCTTAGGACCGTTA 473176 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 1051740 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 1051681 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 1051680 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 1051621 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 1051620 CAAGGAATTTCGCTACCTTAGGACCGTTA 1051592 >seq15 Length=1383265 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 153652 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 153711 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 153712 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 153771 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 153772 CAAGGAATTTCGCTACCTTAGGACCGTTA 153800 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 330069 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 330128 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 330129 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 330188 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 330189 CAAGGAATTTCGCTACCTTAGGACCGTTA 330217 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 1023231 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 1023290 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 1023291 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 1023350 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 1023351 CAAGGAATTTCGCTACCTTAGGACCGTTA 1023379 >seq8 Length=1553183 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 328668 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 328727 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 328728 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 328787 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 328788 CAAGGAATTTCGCTACCTTAGGACCGTTA 328816 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||| || | |||||||||| | | | ||||||| ||||| Sbjct 900473 GGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 900532 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 900533 CCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 900592 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 900593 CAAGGAATTTCGCTACCTTAGGACCGTTA 900621 >seq1207 Length=4506 Score = 134 bits (148), Expect = 2e-29 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG- 82 ||||||||| |||| |||||||||| | |||||||||| | || || |||||||| | Sbjct 4435 GGGGTCTTTCCGTCTTGTCGCGGGTAACCTGCATCTTCACAGGTATTAAAATTTCACCGG 4376 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | ||| || ||||||||| ||| |||||||||| |||| ||| ||||| Sbjct 4375 ATCTCTCG-TTGAGACAGCGCCCAAGTCGTTACGCCATTCGTGCGGGTCAGAATTTACCT 4317 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4316 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 4257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189742565