Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq22 311 2e-82 seq15 311 2e-82 seq8 311 2e-82 seq300 306 8e-81 seq73 306 8e-81 seq1207 257 4e-66 >seq22 Length=1073832 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 476794 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 476851 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 476852 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 476911 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 476912 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 476971 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 476972 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 477019 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 477020 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 477079 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 477080 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 477114 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 1047974 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 1047917 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1047916 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 1047857 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 1047856 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 1047797 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 1047796 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 1047749 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 1047748 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 1047689 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 1047688 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 1047654 >seq15 Length=1383265 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 157418 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 157475 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 157476 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 157535 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 157536 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 157595 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 157596 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 157643 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 157644 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 157703 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 157704 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 157738 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 333835 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 333892 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 333893 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 333952 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 333953 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 334012 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 334013 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 334060 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 334061 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 334120 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 334121 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 334155 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 1026997 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 1027054 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1027055 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 1027114 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 1027115 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 1027174 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 1027175 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 1027222 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 1027223 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 1027282 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 1027283 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 1027317 >seq8 Length=1553183 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 332434 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 332491 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 332492 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 332551 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 332552 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 332611 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 332612 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 332659 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 332660 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 332719 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 332720 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 332754 Score = 311 bits (344), Expect = 2e-82 Identities = 272/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 904239 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 904296 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 904297 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 904356 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 904357 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 904416 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 904417 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 904464 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 904465 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 904524 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || ||||||||||||||||| || Sbjct 904525 ATAGATTCCTACGCGTTACTCACCCGTCCGCCACT 904559 >seq300 Length=136790 Score = 306 bits (338), Expect = 8e-81 Identities = 271/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 90602 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 90659 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 90660 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 90719 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 90720 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 90779 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 90780 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 90827 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 90828 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 90887 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || |||||| |||||||||| || Sbjct 90888 ATAGATTCCTACGCGTTACTCCCCCGTCCGCCACT 90922 >seq73 Length=471550 Score = 306 bits (338), Expect = 8e-81 Identities = 271/335 (81%), Gaps = 14/335 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 238905 CTTTACAATCCGAAAACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 238848 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 238847 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 238788 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||| |||||||||| ||||||||| || Sbjct 238787 TGTGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCA 238728 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| |||||||| || |||||| || |||| | ||| | | ||| Sbjct 238727 CCAACAAGCTAATCAAACGCAGGCTCCTC------CGCAGG---CGACTTGCGC---CTT 238680 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| ||| ||||||||||||| | |||||| | |||||||||||| | | Sbjct 238679 TGACCCTCAGGTGTCATGCGGTATTAGCTCCAGTTTCCCAGAGTTATCCCCCACCCACGG 238620 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| || |||||| |||||||||| || Sbjct 238619 ATAGATTCCTACGCGTTACTCTCCCGTCCGCCACT 238585 >seq1207 Length=4506 Score = 257 bits (284), Expect = 4e-66 Identities = 286/374 (76%), Gaps = 31/374 (8%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| ||||||| |||||| | ||| |||||||||||| || |||||||||||||| Sbjct 728 CTTTACGATCCGAAAACCTTCAT-CACTCACGCGGCATTG-CTCCGTCAGGCTTTCGCCC 671 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| || |||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 670 ATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 611 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||| |||||||| | | |||| ||||||||||||||||||| |||||||| Sbjct 610 TGTGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTGAGCCGTTACCTCA 551 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAG-GCCCGAAGGTCCCCTGCT 239 ||||||||||||| || | |||| |||| | |||| | | || | | || || Sbjct 550 CCAACTAGCTAATGCGCCGCAGGCCCATC------CTCAAGTGACAGATTG-CTCCGTCT 498 Query 240 TTC----TCCCGT-AGG----------ACGTATGCGGTATTAGCGTCCGTTTCCGAACGT 284 ||| |||| | ||| | |||| |||||||||| ||||||||| || Sbjct 497 TTCCAGTTCCCTTCAGGCGAAGAAAACAAGTATTCGGTATTAGCTACCGTTTCCGGTAGT 438 Query 285 TATCCCCCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGC----TCTCA 339 | |||| || ||||| || |||| | ||||||||||||||||||| ||||| Sbjct 437 TGTCCCAAGCTTGAGGGCAGGTTGCCTACGTGTTACTCACCCGTCCGCCGCTAAGTCTCA 378 Query 340 AGAGAAGCAAGCTT 353 || |||||||||| Sbjct 377 GGA-AAGCAAGCTT 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071979256800