Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1207 206 5e-51 seq22 194 3e-47 seq15 194 3e-47 seq8 194 3e-47 seq300 190 4e-46 seq73 190 4e-46 >seq1207 Length=4506 Score = 206 bits (228), Expect = 5e-51 Identities = 236/315 (75%), Gaps = 9/315 (3%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||| ||||||||||||||||| Sbjct 696 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAG 637 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| || Sbjct 636 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTACGCAT 577 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| ||||| ||||| ||||||| | | Sbjct 576 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGCCGCAGGCCCATCCTCAA 517 Query 181 GCGATA-AATCTTTGGTCAAAGAATGATGCCATCCTCTGA-------CATTATGCGGTAT 232 | || | | | | ||| | | | || || || | ||| |||||| Sbjct 516 GTGACAGATTGCTCCGTCTTTCCA-GTTCCCTTCAGGCGAAGAAAACAAGTATTCGGTAT 458 Query 233 TAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCAC 292 |||| ||||||| ||| | ||| || | |||||||||| ||||||||||||| Sbjct 457 TAGCTACCGTTTCCGGTAGTTGTCCCAAGCTTGAGGGCAGGTTGCCTACGTGTTACTCAC 398 Query 293 CCGTCCGCCACTAAG 307 ||||||||| ||||| Sbjct 397 CCGTCCGCCGCTAAG 383 >seq22 Length=1073832 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 476826 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 476885 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 476886 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 476945 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 476946 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 477005 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 477006 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 477051 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 477052 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 477110 Query 301 CACTAAG 307 ||||||| Sbjct 477111 CACTAAG 477117 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 1047942 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1047883 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 1047882 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 1047823 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 1047822 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 1047763 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 1047762 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 1047717 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 1047716 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 1047658 Query 301 CACTAAG 307 ||||||| Sbjct 1047657 CACTAAG 1047651 >seq15 Length=1383265 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 157450 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 157509 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 157510 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 157569 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 157570 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 157629 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 157630 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 157675 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 157676 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 157734 Query 301 CACTAAG 307 ||||||| Sbjct 157735 CACTAAG 157741 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 333867 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 333926 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 333927 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 333986 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 333987 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 334046 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 334047 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 334092 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 334093 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 334151 Query 301 CACTAAG 307 ||||||| Sbjct 334152 CACTAAG 334158 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 1027029 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1027088 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 1027089 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 1027148 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 1027149 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 1027208 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 1027209 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 1027254 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 1027255 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 1027313 Query 301 CACTAAG 307 ||||||| Sbjct 1027314 CACTAAG 1027320 >seq8 Length=1553183 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 332466 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 332525 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 332526 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 332585 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 332586 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 332645 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 332646 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 332691 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 332692 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 332750 Query 301 CACTAAG 307 ||||||| Sbjct 332751 CACTAAG 332757 Score = 194 bits (214), Expect = 3e-47 Identities = 227/307 (74%), Gaps = 15/307 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 904271 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 904330 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 904331 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 904390 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| |||| | ||||||| | |||||| ||| || | || Sbjct 904391 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATCAAACGCAGGCTCCTCCGCAG 904450 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| ||| | | | | |||| | | ||||||||||||| Sbjct 904451 GCGA-----CTTGCGCC---------TTTGACCCTCAGGTGTCATGCGGTATTAGCTCCA 904496 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || | | | | || || || ||| ||||||||||||||||| Sbjct 904497 GTTTCCCAGAGTTATCCCCCACCCACGGATAGATTCCT-ACGCGTTACTCACCCGTCCGC 904555 Query 301 CACTAAG 307 ||||||| Sbjct 904556 CACTAAG 904562 >seq300 Length=136790 Score = 190 bits (210), Expect = 4e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 90634 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 90693 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 90694 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 90753 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| |||||| ||| |||| | ||||||| | |||||| Sbjct 90754 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATC 90793 >seq73 Length=471550 Score = 190 bits (210), Expect = 4e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 238873 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 238814 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 238813 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 238754 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| |||||| ||| |||| | ||||||| | |||||| Sbjct 238753 CATCGCCTTGGTAGGCCATTACCCCACCAACAAGCTAATC 238714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998380680960