Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1207 136 3e-30 seq300 114 1e-23 seq73 114 1e-23 seq22 114 1e-23 seq15 114 1e-23 seq8 114 1e-23 >seq1207 Length=4506 Score = 136 bits (150), Expect = 3e-30 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || |||| | ||||| | ||| |||||||| Sbjct 1621 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGCTTTTTAGGATTCGTTCCACCTCGCGG 1562 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || | |||| |||| |||||||| ||||||| ||||| |||||||| ||| Sbjct 1561 TTTCACTGCCCGTTGTACCGGCCATTGTAGTACGTGTGTAGCCCAGGTCATAAGGGGCAT 1502 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || || |||||||||||||||||||||||||||||||||| Sbjct 1501 GATGATTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1462 >seq300 Length=136790 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 89735 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 89792 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 89793 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 89852 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 89853 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 89894 >seq73 Length=471550 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 239772 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 239715 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 239714 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 239655 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 239654 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 239613 >seq22 Length=1073832 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 475927 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 475984 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 475985 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 476044 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 476045 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 476086 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 1048841 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 1048784 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 1048783 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 1048724 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1048723 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 1048682 >seq15 Length=1383265 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 156551 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 156608 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 156609 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 156668 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 156669 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 156710 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 332968 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 333025 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 333026 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 333085 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 333086 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 333127 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 1026130 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 1026187 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 1026188 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 1026247 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1026248 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 1026289 >seq8 Length=1553183 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 331567 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 331624 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 331625 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 331684 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 331685 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 331726 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| | ||| ||| | |||| Sbjct 903372 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTAGAGATCAGCACGATGTCGC 903429 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 903430 CATCTAGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 903489 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 903490 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 903531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415992201950