Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq300 122 6e-26 seq73 122 6e-26 seq22 122 6e-26 seq15 122 6e-26 seq8 122 6e-26 >seq300 Length=136790 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 86462 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 86521 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 86522 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 86581 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 86582 ACA-GCCGGTTTCCGACCG 86599 >seq73 Length=471550 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 243045 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 242986 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 242985 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 242926 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 242925 ACA-GCCGGTTTCCGACCG 242908 >seq22 Length=1073832 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 472654 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 472713 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 472714 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 472773 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 472774 ACA-GCCGGTTTCCGACCG 472791 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 1052114 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 1052055 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 1052054 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 1051995 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 1051994 ACA-GCCGGTTTCCGACCG 1051977 >seq15 Length=1383265 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 153278 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 153337 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 153338 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 153397 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 153398 ACA-GCCGGTTTCCGACCG 153415 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 329695 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 329754 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 329755 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 329814 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 329815 ACA-GCCGGTTTCCGACCG 329832 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 1022857 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 1022916 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 1022917 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 1022976 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 1022977 ACA-GCCGGTTTCCGACCG 1022994 >seq8 Length=1553183 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 328294 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 328353 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 328354 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 328413 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 328414 ACA-GCCGGTTTCCGACCG 328431 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 900099 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 900158 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 900159 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 900218 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 900219 ACA-GCCGGTTTCCGACCG 900236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351993614500