Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq300 306 6e-81 seq73 306 6e-81 seq22 306 6e-81 seq15 306 6e-81 seq8 306 6e-81 >seq300 Length=136790 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 86127 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 86186 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 86187 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 86246 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 86247 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 86306 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 86307 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 86366 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 86367 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 86400 >seq73 Length=471550 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 243380 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 243321 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 243320 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 243261 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 243260 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 243201 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 243200 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 243141 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 243140 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 243107 >seq22 Length=1073832 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 472319 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 472378 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 472379 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 472438 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 472439 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 472498 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 472499 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 472558 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 472559 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 472592 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 1052449 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 1052390 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 1052389 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 1052330 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 1052329 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 1052270 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 1052269 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 1052210 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 1052209 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 1052176 >seq15 Length=1383265 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 152943 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 153002 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 153003 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 153062 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 153063 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 153122 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 153123 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 153182 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 153183 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 153216 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 329360 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 329419 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 329420 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 329479 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 329480 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 329539 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 329540 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 329599 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 329600 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 329633 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 1022522 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 1022581 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 1022582 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 1022641 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 1022642 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 1022701 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 1022702 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 1022761 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 1022762 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 1022795 >seq8 Length=1553183 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 327959 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 328018 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 328019 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 328078 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 328079 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 328138 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 328139 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 328198 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 328199 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 328232 Score = 306 bits (338), Expect = 6e-81 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| |||| |||||||| ||| | Sbjct 899764 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCACACTTAGCTACCCGG 899823 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 899824 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 899883 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| | ||| || ||||| | |||||||||||||||||||| | Sbjct 899884 TAGGGACAAATCCTCTCAAGTCTCCAACATCCACGGCAGATAGGGACCGAACTGTCTCAC 899943 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 899944 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 900003 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 900004 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 900037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780785363660