Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq300 172 1e-40 seq73 172 1e-40 seq22 172 1e-40 seq15 172 1e-40 seq8 172 1e-40 seq1207 100 5e-19 >seq300 Length=136790 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 88733 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 88678 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 88677 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 88619 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 88618 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 88560 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 88559 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 88507 >seq73 Length=471550 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 240774 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 240829 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 240830 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 240888 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 240889 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 240947 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 240948 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 241000 >seq22 Length=1073832 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 474925 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 474870 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 474869 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 474811 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 474810 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 474752 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 474751 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 474699 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 1049843 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 1049898 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 1049899 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 1049957 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 1049958 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 1050016 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1050017 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 1050069 >seq15 Length=1383265 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 155549 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 155494 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 155493 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 155435 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 155434 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 155376 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 155375 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 155323 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 331966 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 331911 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 331910 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 331852 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 331851 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 331793 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 331792 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 331740 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 1025128 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 1025073 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 1025072 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 1025014 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 1025013 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 1024955 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1024954 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 1024902 >seq8 Length=1553183 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 330565 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 330510 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 330509 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 330451 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 330450 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 330392 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 330391 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 330339 Score = 172 bits (190), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 902370 GGTGGATGCCTTGG----TACCAGGAGGCGAAGAAGGACGTAGCACGCTGCGAAAAGCTA 902315 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 902314 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 902256 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 902255 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 902197 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| Sbjct 902196 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAA 902144 >seq1207 Length=4506 Score = 100 bits (110), Expect = 5e-19 Identities = 175/249 (70%), Gaps = 17/249 (7%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| || |||||||| |||| | || ||||||||||||| | ||| | Sbjct 2168 AGAGCACACGGAGGATGCCTAGGCGCTAGGAGCCGATGAAGGACGTGGCGAACAACGAAA 2227 Query 61 A-GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 || ||||||| | || || |||||||||| ||| ||||||||||||||||| | Sbjct 2228 CTGCCTCGGGGAGCT-GTAAGCAAGCTTTGATCCGGGGATGTCCGAATGGGGAAACCCAG 2286 Query 120 CCCTTTGGGTCAT-TGCA---------TGCTGAATACATAGG-TATGCA-AAGCGAACGC 167 | | |||| || | || ||||||||||||| | || | | || || Sbjct 2287 C---TGGGGTAATATCCAGTTACTCACAACTGAATACATAGGTTGTGTAGAGGCATACCA 2343 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || ||||||||||||||||||| | ||||| ||||| ||| | |||||| ||||| Sbjct 2344 GGGGAACTGAAACATCTAAGTACCCTGAGGAAGAGAAAACAATAGTGATTCCGTCAGTAG 2403 Query 228 TGGCGAGCG 236 |||||||| Sbjct 2404 CGGCGAGCG 2412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918382228960