Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq300 158 3e-36 seq73 158 3e-36 seq22 158 3e-36 seq15 158 3e-36 seq8 158 3e-36 seq1207 154 3e-35 >seq300 Length=136790 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 90603 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 90661 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 90662 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 90721 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 90722 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 90781 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 90782 AACAAGCTAATCAAACGCA 90800 >seq73 Length=471550 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 238904 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 238846 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 238845 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 238786 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 238785 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 238726 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 238725 AACAAGCTAATCAAACGCA 238707 >seq22 Length=1073832 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 476795 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 476853 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 476854 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 476913 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 476914 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 476973 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 476974 AACAAGCTAATCAAACGCA 476992 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 1047973 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 1047915 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 1047914 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 1047855 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 1047854 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 1047795 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 1047794 AACAAGCTAATCAAACGCA 1047776 >seq15 Length=1383265 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 157419 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 157477 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 157478 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 157537 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 157538 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 157597 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 157598 AACAAGCTAATCAAACGCA 157616 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 333836 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 333894 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 333895 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 333954 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 333955 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 334014 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 334015 AACAAGCTAATCAAACGCA 334033 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 1026998 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 1027056 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 1027057 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 1027116 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 1027117 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 1027176 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 1027177 AACAAGCTAATCAAACGCA 1027195 >seq8 Length=1553183 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 332435 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 332493 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 332494 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 332553 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 332554 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 332613 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 332614 AACAAGCTAATCAAACGCA 332632 Score = 158 bits (174), Expect = 3e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| | ||||||| || ||||| | | ||||| |||| | | |||| Sbjct 904240 TTTACAATCCGAA-AACCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 904298 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 904299 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 904358 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||| | | || ||| |||| ||||||| || Sbjct 904359 TGGCTGATCATCCTCTCAGACCAGCTATTGATCATCGCCTTGGTAGGCCATTACCCCACC 904418 Query 269 TACTACCTAATGGAACGCA 287 || | ||||| |||||| Sbjct 904419 AACAAGCTAATCAAACGCA 904437 >seq1207 Length=4506 Score = 154 bits (170), Expect = 3e-35 Identities = 171/227 (75%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 || |||||| || ||| ||||| ||||| | |||||||||| |||||| | | || Sbjct 747 TTCTTCCCTGGCAACAGAGCTTTACGATCCGAA-AACCTTCATCACTCACGCGGCATTGC 689 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | |||| || ||| |||||| || ||||| ||||||||||||||||||||| ||| Sbjct 688 TCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGG 629 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCT 248 |||||||||||| ||| ||||| || | |||||||| | ||| |||||| | || Sbjct 628 GCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCT 569 Query 249 AGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 |||| ||||||||| | || |||| |||||| |||| |||||| Sbjct 568 TGGTGAGCCGTTACCTCACCAACTAGCTAATGCGCCGCAGGCCCATC 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068779318720