Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1526 733 0.0 seq491 367 4e-99 seq77 118 3e-24 >seq1526 Length=2005 Score = 733 bits (812), Expect = 0.0 Identities = 471/508 (93%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 1537 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 1478 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1477 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1418 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1417 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 1358 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1357 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 1298 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| | Sbjct 1297 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 1240 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||| | ||||| || |||| | |||| |||||||||||||||| Sbjct 1239 TTTTTATCTAATAAATACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCT 1180 Query 359 AGAATTACCACGGTTAT-CCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1179 AGAATTACCACAGTTATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTA 1120 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1119 ATGAGCCATTCGCAGTTTCACTGTATAAATTGCTTATACTTAGACATGCATGGCTTAATC 1060 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 1059 TTTGAGACAAGCATATGACTACTGGCAG 1032 >seq491 Length=72148 Score = 367 bits (406), Expect = 4e-99 Identities = 400/528 (76%), Gaps = 25/528 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||| | ||||| | ||||||| Sbjct 16144 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTGTTGCTATTTTTCGTCACTA 16203 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| |||||||| |||||||||| |||||||||||| Sbjct 16204 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGATGCCTTCCTTAGATGTGGTAGCC 16263 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 |||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 16264 GTTTCTTAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 16323 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || ||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 16324 GTAGTCCTAGATATTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 16383 Query 238 GCTCAAGGCCATGCGAT------------TCGTTAAGTTATTATGAAT--CACCAAGG-- 281 | |||| |||| |||| || | ||||| || | ||||| | Sbjct 16384 GTACAAGACCATACGATCTGACCATACGATCTGCATGTTATCTAGAGTTCAACCAATGTA 16443 Query 282 -AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGT 338 | | | || | |||||| |||||||| ||| | | || | ||| | || Sbjct 16444 ACGATCTTGCGATCGCTTGTTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGT 16503 Query 339 TTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396 ||| | ||||||||||||||||||| |||||| |||||||| ||| | || || Sbjct 16504 TTTAATTGCATGTATTAGCTCTAGAAGTACCACAGTTATCCAAGTAATTGTTAACGGTCT 16563 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 || | | ||||||||| ||| ||||| || || |||||||| | || | | | |||| Sbjct 16564 AAGGAGCCATAACTGATATAAAGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACT 16622 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 16623 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 16670 >seq77 Length=575346 Score = 118 bits (130), Expect = 3e-24 Identities = 96/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 || ||| || ||| ||||||||| ||||||||| || | |||| ||| | || | | Sbjct 62737 ACGATCTAAGGAACCATAACTGATATAATGAGCCTTTTGTTGTTTTACTTT-TAATTCGT 62679 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 62678 GTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 62624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510370773760