Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq111 396 2e-105 seq328 250 2e-61 >seq111 Length=362587 Score = 396 bits (438), Expect = 2e-105 Identities = 593/839 (71%), Gaps = 5/839 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| ||||||||||| ||||| ||||| ||| | || || ||| || |||| Sbjct 245194 AGGCCGAAGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACT 245135 Query 61166 GGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||| ||| | | ||| | || | | ||||| || ||| |||| ||||| || Sbjct 245134 GGGCCCGTCTGACCGA-CAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCGCT 245076 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || || || || || |||||| | | || || ||| ||||||||||| | Sbjct 245075 GCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATC 245016 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 ||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||| Sbjct 245015 ACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATG 244956 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 ||||| || ||||| || || ||||| |||||| | ||| || || ||||||||| Sbjct 244955 TACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCAAT 244896 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 || | ||||| || ||||| || ||||| || || || |||||| | ||||| || Sbjct 244895 GCTGTTGAGACCATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATATCC 244836 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | |||| | |||| || || | | || ||||| | || || || | || Sbjct 244835 TCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTC 244776 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||||| || |||||| | ||||||||| ||||||| ||||| || |||||||||||| Sbjct 244775 TTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTG 244716 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 |||||| ||| ||| |||| || || ||||| || | || || || ||||| | || Sbjct 244715 ACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGG---TG 244659 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || | | | |||||||| | ||||| | |||||| | |||||| || | Sbjct 244658 CTCATGTACCAGCATCTGGTGCAGCGTCCCAAGCGGGAGCGCATTATTGAGATCATTAGG 244599 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || ||||| || || || || || || || ||||| | | || ||| Sbjct 244598 GATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGC 244539 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| || | || ||||| ||||| ||||||||||| ||||| |||||| || | || Sbjct 244538 ATGAACTGCGTCCTCATGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAG 244479 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 | ||| || |||||| || || || || || || ||||||||| ||||| || Sbjct 244478 CTCGGTGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCT 244419 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 ||||| || ||||| || || || |||||| || | ||| || || || |||| || Sbjct 244418 CTGGACGGAAAGACAAACTTCTTTGAGAAAAAGGTTGCCGAGTACCAGCGCATGGGAGT 244360 >seq328 Length=165906 Score = 250 bits (276), Expect = 2e-61 Identities = 999/1555 (64%), Gaps = 37/1555 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| || || || || ||||| ||||| | || || | | ||| ||||| ||||| Sbjct 107405 TCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTT 107346 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || ||||| ||| | | ||||| || |||| |||||| | || || |||||| Sbjct 107345 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCG 107286 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||||||| | ||| ||||||||||| ||||| || | ||| | ||| |||||||| Sbjct 107285 GCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATC 107226 Query 65258 TCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | ||| | || | | || || ||||| || || || || || || || | Sbjct 107225 TTAATTGTG-GATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTG 107167 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||||| ||||| | || | || || | || || ||| || ||| ||| Sbjct 107166 GGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATC 107107 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||| || |||| || | | || | || ||| |||||| ||||| || Sbjct 107106 ATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAA 107047 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || || | ||| || | ||| || || | || ||||| || ||||| | Sbjct 107046 TTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTCGTT 106987 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 || || | |||||||||||||||||| || ||||| ||||| || ||||| || || | Sbjct 106986 ATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCT 106927 Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616 | ||||| ||| ||||| | || | | ||| | ||| | ||| | | Sbjct 106926 AATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAA--GTTCGTTG-- 106871 Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676 || | | ||||||||| | ||| || | || | || | || || | Sbjct 106870 GAGTTTTATC--CCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATA 106813 Query 65677 ACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAAT 65735 | |||||| || | ||| | ||||| ||| || | || | || |||||| Sbjct 106812 GGTTTCGTACGGACCAAA-TATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAAT 106754 Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATAC 65795 |||| || || || || || | || | || || || || || || || || | || Sbjct 106753 AAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAAC 106694 Query 65796 CCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCA 65855 ||| || | |||| ||| || | ||||||||| || ||||| || |||||||| | | Sbjct 106693 GCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTA 106634 Query 65856 AATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAAT 65915 ||||||| | || || || | ||||| || ||||| || || || ||| | || Sbjct 106633 AATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGAT 106574 Query 65916 TGCGTGTCACCACA-TGCACGATACGTCGC--AATTGTTCGAAATCAAAATGTTTAGGAC 65972 | | | | ||| | | ||| || |||| || ||||||||| ||||| Sbjct 106573 T---TTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAA-TGTTTTT--- 106521 Query 65973 GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 || || || |||||| || ||| |||| || || | ||||| |||| Sbjct 106520 --TCTGGTGTT---------ACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAG 106472 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 | ||||| ||||| || | ||||| |||||||| || || | ||||||||| || | Sbjct 106471 CGATCTCATCAGGTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAG 106412 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||| | ||| |||||||| ||||| | ||| || | |||||| | | |||||| || Sbjct 106411 TGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGT 106352 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTAC 66212 | || || |||||||| || || || ||||| ||| | | | || ||||| || | Sbjct 106351 TACCAGTTTCAACTTGCGATTCTATAATGGCAAACCATAACGACTGAGCTTTCACTGTTC 106292 Query 66213 GTACCGCCC-TACCT-TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 | || | | ||| |||| || || | | || || || || || ||| ||||| Sbjct 106291 GATTAGCACGTCCCTCTTGC--TCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCA 106234 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 || || || | ||||| || ||||||||||||| |||||| | ||| ||| Sbjct 106233 AACATCTTGAAGTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTC 106174 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 || || ||| || ||||| || ||||| | || || || ||||| |||||||| | Sbjct 106173 AACCCGTTTCATGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTT 106114 Query 66391 CTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 || || | || ||| || || | | ||| | || ||||| | || | |||||| | Sbjct 106113 TTCTTCTTTTCCAGTGTTTCTTTTG-AGGTCTAAAAATTCAAAAACATCTGAATGCCAGG 106055 Query 66450 GTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAG 66509 | || | || || || || | || | ||| || || || || || || || || | Sbjct 106054 GCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTG 105995 Query 66510 CGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGT 66569 | ||||| || || || | | ||| || || | || || || | || || || || Sbjct 105994 CCACATTATTAAATACTCTTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTCCAC 105935 Query 66570 CGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 |||| | ||| || || ||| |||||||| || ||||| ||||| || Sbjct 105934 ATATGGAAGTGCCTTTGGCACGAATACAATGAACATTAAGTCCAATTCCACCCGC 105880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558624228400