Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq76 114 5e-20 seq337 98.7 4e-15 seq72 91.5 6e-13 seq33 87.8 7e-12 >seq76 Length=474712 Score = 114 bits (126), Expect = 5e-20 Identities = 177/247 (72%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 626204 TGGGAGGACTACTTTATGATGCTGGCCCTTCTCTCGGCCCAGCGCTCCAAGGACCCCAAC 626263 ||||| |||||||| ||| | |||| ||||||||||||||| ||| ||||| | Sbjct 77557 TGGGACGACTACTTCATGGCCACGTCCCTGCTCTCGGCCCAGCGCAGCAAAGACCCTGTC 77498 Query 626264 ACTCAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTATGGGCTACAAC 626323 || ||||| || |||||||| || || || | |||||| |||| | || || ||||| Sbjct 77497 ACCCAGGTGGGCGCCTGCATAGTTGACCAGCAGAAGCGCATCGTTGCCATTGGTTACAAT 77438 Query 626324 GGCTTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTG---GAAG-CGCGATAGCGCATG 626379 || |||||||| ||||| ||| || | || || || |||| | | || ||| | Sbjct 77437 GGATTCCCGCGAAACTGCAGTGATGATGAGTTCCCCTGGTTGAAGTTGGGCCAGAGCA-G 77379 Query 626380 TGAGGAC-ATTCTCGACAG--CAAGAGCCTCTATGTGGTTCACGCCGAACTCAACGCCAT 626436 | ||| |||| | | || ||||| || |||||||| || ||||| ||||||||| Sbjct 77378 TTCTGACGATTCCCTAGAGGACAAGAAGCTGTATGTGGTCCATGCCGAGGCCAACGCCAT 77319 Query 626437 CCTCAAC 626443 |||||| Sbjct 77318 ACTCAAC 77312 >seq337 Length=119821 Score = 98.7 bits (108), Expect = 4e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 |||||||| || ||| | | || ||||||||||| ||||| || ||||| | Sbjct 64332 GTCATGCGGGAGGGGAATCCGTGAGGGTTCATGATCATGTCCGGACAAATGCCGGAATCA 64391 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||| ||||||||||||| ||| || | || || |||| |||||||| ||||| || Sbjct 64392 TTGTAGGGCATGTCCTCCTGGTCCACAATGAGCCCCGTGACACCCTTCTGACCGTGCCGC 64451 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGATG 449182 || ||||||||| || |||||| |||| || |||||| | |||||||||| Sbjct 64452 GAGCTGAACTTGTCGCCAATCTCGGGTATGCGGGTCTGGCGCAGAAGGATCTTGATG 64508 >seq72 Length=518284 Score = 91.5 bits (100), Expect = 6e-13 Identities = 129/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| || || || ||||| ||||||||| ||| || |||| |||| || | Sbjct 384496 TCTCGTCGCCATCGAAATCGGCATTGTAGGGCGATGTGCAGGAAAGGTTCATGCGGAACG 384437 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 || | | ||| || ||| ||| || ||| |||| || | |||||||| ||| Sbjct 384436 TGGACCA----GGGCAGCACCTTCACACGATGCCCCATCATACTCATCTTGTGGAGGGTG 384381 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 |||||||||||| ||| | | ||| | ||||||| |||||||||||||||| |||| Sbjct 384380 GGCTGGCGATTGAAGATCACTAGATCGTCGTCGCGCAGATGCCTCTCCACCTTGTAGCCG 384321 >seq33 Length=838361 Score = 87.8 bits (96), Expect = 7e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 21735 TGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACC 21794 || || |||||||| |||||||| | || |||||| |||||||||||||| || || Sbjct 265304 TGAGCAATGCGATCTCCATGCTTCACCTCGAAGTCCGTTTCAGAGTGGTTGAATAGAACG 265363 Query 21795 ACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAGCCCGTTC 21854 || || | ||||| | || || || || |||||||| || || | |||| Sbjct 265364 ACGCCCAGATTGCCGCGGTAGTCTTCATCCACAACGCCGGCGCCCACATCAATAAAGTTC 265423 Query 21855 TTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900 |||| |||||| || || | ||||||||||| || ||| ||||| Sbjct 265424 TTCACGGCCAGGCCAGAGCGCGGAGCGACGCGACCATAGGAGCCCT 265469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084686254139130