Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq76 114 5e-20
seq337 98.7 4e-15
seq72 91.5 6e-13
seq33 87.8 7e-12
>seq76
Length=474712
Score = 114 bits (126), Expect = 5e-20
Identities = 177/247 (72%), Gaps = 8/247 (3%)
Strand=Plus/Minus
Query 626204 TGGGAGGACTACTTTATGATGCTGGCCCTTCTCTCGGCCCAGCGCTCCAAGGACCCCAAC 626263
||||| |||||||| ||| | |||| ||||||||||||||| ||| ||||| |
Sbjct 77557 TGGGACGACTACTTCATGGCCACGTCCCTGCTCTCGGCCCAGCGCAGCAAAGACCCTGTC 77498
Query 626264 ACTCAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTATGGGCTACAAC 626323
|| ||||| || |||||||| || || || | |||||| |||| | || || |||||
Sbjct 77497 ACCCAGGTGGGCGCCTGCATAGTTGACCAGCAGAAGCGCATCGTTGCCATTGGTTACAAT 77438
Query 626324 GGCTTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTG---GAAG-CGCGATAGCGCATG 626379
|| |||||||| ||||| ||| || | || || || |||| | | || ||| |
Sbjct 77437 GGATTCCCGCGAAACTGCAGTGATGATGAGTTCCCCTGGTTGAAGTTGGGCCAGAGCA-G 77379
Query 626380 TGAGGAC-ATTCTCGACAG--CAAGAGCCTCTATGTGGTTCACGCCGAACTCAACGCCAT 626436
| ||| |||| | | || ||||| || |||||||| || ||||| |||||||||
Sbjct 77378 TTCTGACGATTCCCTAGAGGACAAGAAGCTGTATGTGGTCCATGCCGAGGCCAACGCCAT 77319
Query 626437 CCTCAAC 626443
||||||
Sbjct 77318 ACTCAAC 77312
>seq337
Length=119821
Score = 98.7 bits (108), Expect = 4e-15
Identities = 128/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065
|||||||| || ||| | | || ||||||||||| ||||| || ||||| |
Sbjct 64332 GTCATGCGGGAGGGGAATCCGTGAGGGTTCATGATCATGTCCGGACAAATGCCGGAATCA 64391
Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125
||| ||||||||||||| ||| || | || || |||| |||||||| ||||| ||
Sbjct 64392 TTGTAGGGCATGTCCTCCTGGTCCACAATGAGCCCCGTGACACCCTTCTGACCGTGCCGC 64451
Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGATG 449182
|| ||||||||| || |||||| |||| || |||||| | ||||||||||
Sbjct 64452 GAGCTGAACTTGTCGCCAATCTCGGGTATGCGGGTCTGGCGCAGAAGGATCTTGATG 64508
>seq72
Length=518284
Score = 91.5 bits (100), Expect = 6e-13
Identities = 129/180 (72%), Gaps = 5/180 (3%)
Strand=Plus/Minus
Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161
||||||| || || || ||||| ||||||||| ||| || |||| |||| || |
Sbjct 384496 TCTCGTCGCCATCGAAATCGGCATTGTAGGGCGATGTGCAGGAAAGGTTCATGCGGAACG 384437
Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220
|| | | ||| || ||| ||| || ||| |||| || | |||||||| |||
Sbjct 384436 TGGACCA----GGGCAGCACCTTCACACGATGCCCCATCATACTCATCTTGTGGAGGGTG 384381
Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280
|||||||||||| ||| | | ||| | ||||||| |||||||||||||||| ||||
Sbjct 384380 GGCTGGCGATTGAAGATCACTAGATCGTCGTCGCGCAGATGCCTCTCCACCTTGTAGCCG 384321
>seq33
Length=838361
Score = 87.8 bits (96), Expect = 7e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 21735 TGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACC 21794
|| || |||||||| |||||||| | || |||||| |||||||||||||| || ||
Sbjct 265304 TGAGCAATGCGATCTCCATGCTTCACCTCGAAGTCCGTTTCAGAGTGGTTGAATAGAACG 265363
Query 21795 ACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAGCCCGTTC 21854
|| || | ||||| | || || || || |||||||| || || | ||||
Sbjct 265364 ACGCCCAGATTGCCGCGGTAGTCTTCATCCACAACGCCGGCGCCCACATCAATAAAGTTC 265423
Query 21855 TTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900
|||| |||||| || || | ||||||||||| || ||| |||||
Sbjct 265424 TTCACGGCCAGGCCAGAGCGCGGAGCGACGCGACCATAGGAGCCCT 265469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084686254139130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |