Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq3100 93.3 2e-13 seq1635 93.3 2e-13 seq1611 87.8 7e-12 seq1627 86.0 3e-11 >seq3100 Length=919 Score = 93.3 bits (102), Expect = 2e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || |||| || || |||||||| ||| ||| | || |||||| | Sbjct 470 AGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCACCTCGAAGTCCGTAT 529 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 |||||||||||||||| || || || | ||||| | || ||| || || |||| Sbjct 530 CAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGG 589 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGT 21894 |||| || || | |||||||| |||||| || || | ||||||||||| || ||| Sbjct 590 CGCCCACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGG 649 Query 21895 GGCCCT 21900 ||||| Sbjct 650 AGCCCT 655 >seq1635 Length=10282868 Score = 93.3 bits (102), Expect = 2e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || |||| || || |||||||| ||| ||| | || |||||| | Sbjct 7815479 AGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCACCTCGAAGTCCGTAT 7815420 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 |||||||||||||||| || || || | ||||| | || ||| || || |||| Sbjct 7815419 CAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGG 7815360 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGT 21894 |||| || || | |||||||| |||||| || || | ||||||||||| || ||| Sbjct 7815359 CGCCCACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGG 7815300 Query 21895 GGCCCT 21900 ||||| Sbjct 7815299 AGCCCT 7815294 >seq1611 Length=1448063 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 349075 GTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGC 349134 || || |||||||||||||| |||| |||||| ||||||||||| | | || || || Sbjct 977771 GTTGATAATCTCCTTGAGTCGAGGCACGCCCAGTGTCACGTTCTTCGAGGACACACCAGC 977830 Query 349135 AAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAG 349194 || ||||| || | ||| |||| ||| ||| || ||||| | | |||| | || | Sbjct 977831 GAAATGGAACGTGTTGAGTGTCATCTGGGTGGCCGGTTCGCCCAAACTCTGGGCGGCTAA 977890 Query 349195 GATGCCTACCATCTCGCCGGG 349215 | ||| ||||||||||| || Sbjct 977891 GGCGCCAACCATCTCGCCAGG 977911 Score = 86.0 bits (94), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| || || || ||||| ||||||||| ||| || |||| || | || | Sbjct 979750 TCTCGTCGCCATCGAAATCGGCATTGTAGGGCGATGTGCAGGAGAGGTTCATCCGGAACG 979809 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 || | | ||| | ||| ||| || ||| |||| || | |||||||||||| Sbjct 979810 TGGACCA----GGGCAGAACCTTCACACGATGCCCCATCATACTCATCTTGTGGAGCGTG 979865 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 |||||||||||| ||| | | ||| | ||||||| |||||||||||||||| |||| Sbjct 979866 GGCTGGCGATTGAAGATCACAAGATCGTCGTCGCGCAGATGCCTCTCCACCTTGTAGCCG 979925 >seq1627 Length=3637205 Score = 86.0 bits (94), Expect = 3e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 626193 ACTACATCGAATGGGAGGACTACTTTATGATGCTGGCCCTTCTCTCGGCCCAGCGCTCCA 626252 ||||| | | ||||| || ||||| ||| | |||| ||||| ||||||||| || Sbjct 394699 ACTACCTGCATTGGGATGATTACTTCATGGCCACGTCCCTGCTCTCAGCCCAGCGCAGCA 394758 Query 626253 AGGACCCCAACACTCAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTA 626312 | ||||| ||| ||||| || ||||||||||| || || | |||||| | || | | Sbjct 394759 AAGACCCTGTCACCCAGGTGGGCGCCTGCATCGTGGACCAGCAGAAGCGCATTGTTGCCA 394818 Query 626313 TGGGCTACAACGGCTTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTGG 626362 | || ||||| || || ||||| ||||| || |||| || || ||| Sbjct 394819 TCGGTTACAATGGATTACCGCGCAACTGCAGCGATGACGAGTTCCCCTGG 394868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084387924050724